View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2224_high_4 (Length: 387)
Name: NF2224_high_4
Description: NF2224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2224_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Original strand, 44379561 - 44379921
Alignment:
| Q |
17 |
agatggaaaattccaagaatacatcaacaaaagggtgnnnnnnntaaactagtacacctgttgcagctcagatagaaaacaaattcagagaaataatcac |
116 |
Q |
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| T |
44379561 |
agatggaaaattccaagaatacatcaacaaaagggtgaaaaaaataaactagtacacctgttgcagctcagatagaaaacaaattcagagaaataatcac |
44379660 |
T |
|
| Q |
117 |
atattttaaaggctatgattcaagctacaaattcttcacagcaattaagagagcaagtattaaacaagaaacaagtttgagataaagaaaatggaattac |
216 |
Q |
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| T |
44379661 |
atattttaaaggctatgattcaagctacaaattcttcacagcaattaagagagcaagtattaaacaagaaacaagtttgagataaagaaaatggaattac |
44379760 |
T |
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| Q |
217 |
actcactcttgcagtgtcatcagcattgataagaacaaactcattcctgttatgtgatcctgcaactaatcttccattagtgtccattgaaactaacatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44379761 |
actcactcttgcagtgtcatcagcattgataagaacaaactcattcctgttatgtgatcctgcaactaatcttccattagtgtccattgaaactaacatt |
44379860 |
T |
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| Q |
317 |
cagaaacacaatcacatgaatcttcaaaaccctcttcaaaaacaactcttatctgtctctg |
377 |
Q |
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| T |
44379861 |
cagaaacacaatcacatgaatcttcaaaaccctcttcaaaaacaactcttatctgtctctg |
44379921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 28846887 - 28846937
Alignment:
| Q |
259 |
attcctgttatgtgatcctgcaactaatcttccattagtgtccattgaaac |
309 |
Q |
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| T |
28846887 |
attcatgttatgtgaccctgcaattagtctcccattagtgtccattgaaac |
28846937 |
T |
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