View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2224_high_5 (Length: 374)
Name: NF2224_high_5
Description: NF2224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2224_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 4 - 286
Target Start/End: Original strand, 45643214 - 45643496
Alignment:
| Q |
4 |
atatgacgagatcacagtgaataaagtcttgatcgttgatgatgccattgtgaatttgttgccataaattgttttgaagaaatttaagtttgaaaaatga |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45643214 |
atatgacgagatcacagtgaataaagtcttgatcgttgatgatgccattgtgaatttgttgccataaattgttttgaagaaatttaagtttgaaaaatga |
45643313 |
T |
|
| Q |
104 |
ttaaatgccccacaacatgattatcactaatttcaatggcaaaaccacaagatctaatggtgtcgtcaatttgaacctaaaaattggatcaatacttcaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45643314 |
ttaaatgccccacaacatgattatcactaatttcaatggcaaaaccacaagatctaatggtgtcgtcaatttgaacctaaaaattggatcaatacttcaa |
45643413 |
T |
|
| Q |
204 |
cctaccatgtttattgcagttccttcgaaagcagattacaatttatttctaggataagaggggatacatcatacatgttactg |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45643414 |
cctaccatgtttattgcagttccttcgaaagcaaattacaatttatttctaggataagaggggatacatcatacatgttactg |
45643496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 284 - 354
Target Start/End: Original strand, 45643556 - 45643626
Alignment:
| Q |
284 |
ctgggcgtcaaagattcaaatatcaaaggaaaacttgtagaagaagattcttgggaagttagaaggcacat |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45643556 |
ctgggcgtcaaagattcaaatatcaaaggaaaacttgtagaagaagattcttgggaagttagaaggcacat |
45643626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University