View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2224_high_7 (Length: 339)
Name: NF2224_high_7
Description: NF2224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2224_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 76 - 332
Target Start/End: Original strand, 10426677 - 10426932
Alignment:
| Q |
76 |
agcaagccctgtaaattctagataagaccttggaggcatgtgtatcattcaaattgatcaattccaatgtgctgaattaataaatatacaatggtgttga |
175 |
Q |
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| T |
10426677 |
agcaagctctgtaaattctagataagaccttg-aggcatgtgtatcattcaaattgatcaattccaatgtgctgaaataataaatatacaatggtgttga |
10426775 |
T |
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| Q |
176 |
taggatttggaaatatgcatcagataagtcttcagccgcacataggagaagctaccaaggatattttcaacttcccttacatttacgatgcagcttatat |
275 |
Q |
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| T |
10426776 |
taggatttggaaatatgcatcagataagtcttcagccgcgcaaaggagaagctaccaaggatattttcaacttcccttacatttacgatgcagcttatat |
10426875 |
T |
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| Q |
276 |
ttattaagataagattagtgcatcaagtcacatgttaagaaggtagcaatgaaccta |
332 |
Q |
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| T |
10426876 |
ttattaagataagattagtgcatcaagtcacatgttaagaaggtagcaatgaaccta |
10426932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10426292 - 10426336
Alignment:
| Q |
1 |
gaataatgtggagaaccgagatactacgatgaagcgttgaattaa |
45 |
Q |
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| T |
10426292 |
gaataatgtggagaacggagatattacgatgaagcgttgaattaa |
10426336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 97 - 298
Target Start/End: Complemental strand, 4410938 - 4410741
Alignment:
| Q |
97 |
ataagaccttggaggcatgtgtatcattcaaattgatcaattccaatgtgctgaattaataaatatacaatggtgttgataggatttggaaatatgcatc |
196 |
Q |
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| T |
4410938 |
ataagaccttggaggcatgtgtaccattcacattgatcaattccaatgtgctgaattaattaatatacaatggtgctgataggatttgaaaatatgcatc |
4410839 |
T |
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| Q |
197 |
agataagtcttcagccgcacataggagaagctaccaaggatattttcaacttcccttacatttacgatgcagcttatatttattaagataagattagtgc |
296 |
Q |
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| T |
4410838 |
agatcagtcat----tgcacaaaggagaagctaccaaggatattttcaactttccttacatttacgatgcaacttatgtttattaagataagattagcgc |
4410743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 328
Target Start/End: Complemental strand, 4407926 - 4407898
Alignment:
| Q |
300 |
aagtcacatgttaagaaggtagcaatgaa |
328 |
Q |
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| T |
4407926 |
aagtcacatgttaagaaggtagcaatgaa |
4407898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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