View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2224_low_1 (Length: 651)

Name: NF2224_low_1
Description: NF2224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2224_low_1
NF2224_low_1
[»] chr4 (1 HSPs)
chr4 (5-638)||(51507559-51508192)


Alignment Details
Target: chr4 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 5 - 638
Target Start/End: Original strand, 51507559 - 51508192
Alignment:
Q  5 gagagagaagaagacactgaatacgatcgaataacatgacaaaaattgcagtgtattcagaatggccaataagaaattatgagtgagacacctagatttt 104  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51507559 gagacagaagaagacactgaatacgattgaataacatgacaaaaattgcagtgtattcagaatggccaataagaaattatgagtgagacacctagatttt 51507658  T
Q  105 cttatcgtgactttcataggtatctagaatttcctattatcatgtattccttcaggtatggggagccgtacgggtacatcaatataaaattagtttttaa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  51507659 cttatcgtgactttcataggtatctagaatttcctattatcatgtattccttcaggtatggggagctgtacgggtacatcaatataaaattagtttttaa 51507758  T
Q  205 tcataatataacatgatagaattatattgttcaaatggcaaccaaaatcaaaaatctatttgttcaaaaaactcaagatctatatgcatgactattaaaa 304  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51507759 tcataatataacatgatagaattatattgttcaaatggaaaccaaaatcaaaaacctatttgttcaaaaaactcaagatctatatgcatgactattaaaa 51507858  T
Q  305 atcacactctgacactgtcaataacaatatcactatatctttttccgcaagtaaaagttcaagttttaaataaatggctgcttacttcaagttccgagta 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51507859 atcacactctgacactgtcaataacaatatcactatatctttttccccaagtaaaagttcaagttttaaataaatggctgcttacttcaagttccgagta 51507958  T
Q  405 tgatatagcatcaaaactctgacccacatgacagttaaccaagtggaaggagcctcctgcagcttcaataatatctagggcctcatttatcagaaactga 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51507959 tgatatagcatcaaaactctgacccacatgacagttaaccaagtggaaggagcctcctgcagcttcaataatatctagggcctcatttatcagaaactga 51508058  T
Q  505 tcaaataagtgaccactcagagaaacctgtcagtcatattcagcgatcatggtcataagattaactataaaacagcaggatcgccaatggataataatat 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51508059 tcaaataagtgaccactcagagaaacctgtcagtcatattcagcgatcatggtcataagattaactataaaacagcaggatcgccaatggataataatat 51508158  T
Q  605 tgaaacttatgaacgcaccgatgtgttgtatttg 638  Q
    ||||||||||||||||||||||||||||||||||    
T  51508159 tgaaacttatgaacgcaccgatgtgttgtatttg 51508192  T

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