View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2224_low_12 (Length: 249)

Name: NF2224_low_12
Description: NF2224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2224_low_12
NF2224_low_12
[»] chr8 (5 HSPs)
chr8 (3-98)||(26981034-26981130)
chr8 (3-97)||(26083903-26083998)
chr8 (8-97)||(5334273-5334363)
chr8 (40-97)||(42932716-42932773)
chr8 (67-99)||(7496756-7496788)
[»] chr7 (3 HSPs)
chr7 (3-97)||(20077317-20077412)
chr7 (3-97)||(4407779-4407872)
chr7 (9-90)||(30061499-30061581)
[»] chr4 (6 HSPs)
chr4 (3-98)||(10427623-10427718)
chr4 (3-97)||(9199750-9199845)
chr4 (36-97)||(9199512-9199573)
chr4 (3-54)||(9201332-9201384)
chr4 (36-97)||(12094864-12094925)
chr4 (36-97)||(24257703-24257764)
[»] chr6 (3 HSPs)
chr6 (6-98)||(31442516-31442609)
chr6 (11-97)||(20915980-20916067)
chr6 (28-97)||(7867948-7868018)
[»] chr5 (2 HSPs)
chr5 (8-97)||(6697935-6698025)
chr5 (3-60)||(9045160-9045218)
[»] chr3 (4 HSPs)
chr3 (3-72)||(11582599-11582669)
chr3 (44-100)||(2241513-2241569)
chr3 (21-99)||(39484801-39484881)
chr3 (28-98)||(15291460-15291530)
[»] chr2 (3 HSPs)
chr2 (26-97)||(38996518-38996590)
chr2 (26-98)||(22625385-22625458)
chr2 (28-97)||(28125536-28125606)


Alignment Details
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 26981130 - 26981034
Alignment:
Q  3 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 98  Q
    |||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26981130 ctaaggagaatttaatgcttggatgatggaggaaaaatattaggttaaaattagggtatgatattgcttgatcaaacaagctttagtaagaaagata 26981034  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 26083998 - 26083903
Alignment:
Q  3 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 97  Q
    ||||| |||||||||| ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| || | |||||||||||||||||||    
T  26083998 ctaagaagaatttaatgctttgatgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccagacaagctttagtaagaaagat 26083903  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 5334363 - 5334273
Alignment:
Q  8 gagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 97  Q
    ||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||| ||||||| | ||  |||| ||||||||||    
T  5334363 gagaatttaatgcttggatgatggagggaaaatcttaggttaaaattagggtatgatattgtttgatcagataatttttaataagaaagat 5334273  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 42932773 - 42932716
Alignment:
Q  40 attaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 97  Q
    |||| |||||||||||| |||||||||||||||||| | |||||||||||||||||||    
T  42932773 attaggttaaaattaggatatgatattgcttgatcagacaagctttagtaagaaagat 42932716  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 7496788 - 7496756
Alignment:
Q  67 gcttgatcaaagaagctttagtaagaaagataa 99  Q
    ||||||||||| |||||||||||||||||||||    
T  7496788 gcttgatcaaacaagctttagtaagaaagataa 7496756  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 20077317 - 20077412
Alignment:
Q  3 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 97  Q
    |||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  20077317 ctaaggtgaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccaaacaagctttagtaagaaagat 20077412  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 4407872 - 4407779
Alignment:
Q  3 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 97  Q
    ||||||||||||||||  |||| ||||||||||||| ||||| |||||||||||||||||||||||||||| |  ||| |||||||||||||||||    
T  4407872 ctaaggagaatttaatgtttgggtgatggagggaaaatattaggttaaaattagggtatgatattgcttgacc--agacgctttagtaagaaagat 4407779  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 30061581 - 30061499
Alignment:
Q  9 agaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaa 90  Q
    |||||| |||||||| |  ||||||||||| ||||| | | |||||||||||||| || ||||||||| | ||||||||||||    
T  30061581 agaattaaatacttgtacaatggagggaaaatattagggttaaattagggtatgagatagcttgatcagacaagctttagtaa 30061499  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 10427623 - 10427718
Alignment:
Q  3 ctaaggagaatttaatacttggatgatggagggaaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 98  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| || ||||| ||| |||||||    
T  10427623 ctaagaagaatttaatgcttggatgatggagggaaatattaggttaaaattagggtatgatattgcttgaccaaacaacctttaataaaaaagata 10427718  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 9199845 - 9199750
Alignment:
Q  3 ctaaggagaatttaatacttggatgatggaggg-aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 97  Q
    |||||||||||||||| |||||||||||||||| |||||||| ||||| | | || ||||||||||||||| || | |||||||||||||||||||    
T  9199845 ctaaggagaatttaatgcttggatgatggagggaaaatattaggttaatagtgggatatgatattgcttgaccagacaagctttagtaagaaagat 9199750  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 9199573 - 9199512
Alignment:
Q  36 aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 97  Q
    |||||||| |||||||||||||||||||||||||||| || | |||||||||||||||||||    
T  9199573 aaatattaggttaaaattagggtatgatattgcttgaccagacaagctttagtaagaaagat 9199512  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 9201384 - 9201332
Alignment:
Q  3 ctaaggagaatttaatacttggatgatggaggg-aaatattaagttaaaatta 54  Q
    |||||||||||||||| |||||||||||| ||| |||||||| ||||||||||    
T  9201384 ctaaggagaatttaatgcttggatgatggtgggaaaatattaggttaaaatta 9201332  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 12094864 - 12094925
Alignment:
Q  36 aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 97  Q
    |||||||| |||||||||||||| |   || |||||| |||| |||||||||||||||||||    
T  12094864 aaatattaggttaaaattagggtttctaatagcttgaccaaacaagctttagtaagaaagat 12094925  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 24257764 - 24257703
Alignment:
Q  36 aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 97  Q
    |||||||| ||||||||||||||     ||||||||| |||| |||||||||||||||||||    
T  24257764 aaatattaggttaaaattagggtgaacaattgcttgaccaaacaagctttagtaagaaagat 24257703  T

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Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 31442609 - 31442516
Alignment:
Q  6 aggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 98  Q
    ||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||  ||||||||| |||| ||||||||||||||||||||    
T  31442609 aggagaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgtgattgcttgaccaaacaagctttagtaagaaagata 31442516  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 20915980 - 20916067
Alignment:
Q  11 aatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 97  Q
    |||||||| ||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||| | |||||||||||||||||||    
T  20915980 aatttaatgcttggatgatggagggaaaatattaggttaaaattaaggtatcatattgcttgatcagacaagctttagtaagaaagat 20916067  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 7867948 - 7868018
Alignment:
Q  28 atggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 97  Q
    ||||||||||| ||||| | | |||||||||||||| || |||||| || | |||||||||||||||||||    
T  7867948 atggagggaaaatattagggttaaattagggtatgagatagcttgaccagataagctttagtaagaaagat 7868018  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 6698025 - 6697935
Alignment:
Q  8 gagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 97  Q
    ||||||||||| |||| |||||||||||||| ||||| |||||||||| ||||||| ||||||||| || | ||| |||||||||||||||    
T  6698025 gagaatttaatgcttgcatgatggagggaaaatattaggttaaaattaaggtatgagattgcttgaccagacaagttttagtaagaaagat 6697935  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 9045218 - 9045160
Alignment:
Q  3 ctaaggagaatttaatacttggatgatggaggg-aaatattaagttaaaattagggtat 60  Q
    ||||||||||||||||  || |||||||||||| |||||||| ||||||||||||||||    
T  9045218 ctaaggagaatttaatgttttgatgatggagggaaaatattaggttaaaattagggtat 9045160  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 11582669 - 11582599
Alignment:
Q  3 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttga 72  Q
    ||||| ||||||||||  |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  11582669 ctaagaagaatttaatgtttggatgacggagggaaaatattaggttaaaattagggtatgatattgcttga 11582599  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 2241513 - 2241569
Alignment:
Q  44 agttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagataag 100  Q
    ||||||||||| ||||||| |||||||||  ||| |||||||||||||||| |||||    
T  2241513 agttaaaattaaggtatgaaattgcttgacgaaacaagctttagtaagaaaaataag 2241569  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 39484801 - 39484881
Alignment:
Q  21 ttggatgatggagggaaa-tattaagttaaaattagggt-atgatattgcttgatcaaagaagctttagtaagaaagataa 99  Q
    |||| ||||||||||||| ||||| ||||||| |||||| |  |||| |||||| |||| |||||||||||||||||||||    
T  39484801 ttgggtgatggagggaaaatattaggttaaaactagggtgaacatatagcttgaccaaacaagctttagtaagaaagataa 39484881  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 15291530 - 15291460
Alignment:
Q  28 atggagggaaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 98  Q
    ||||||||||| |||| ||||| |||||||||    || |||||| |||| ||||||||||||||||||||    
T  15291530 atggagggaaaaattaggttaagattagggtaaacaatagcttgaccaaacaagctttagtaagaaagata 15291460  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 38996518 - 38996590
Alignment:
Q  26 tgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 97  Q
    ||||||||||||| ||||| |||||||||||||||  |||| ||||||||| | |||||||||||||||||||    
T  38996518 tgatggagggaaaatattaggttaaaattagggtaacatatagcttgatcagacaagctttagtaagaaagat 38996590  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 22625385 - 22625458
Alignment:
Q  26 tgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 98  Q
    ||||||||||||| ||||| ||||||||||||||||   ||||||||| || | ||| ||||||||||||||||    
T  22625385 tgatggagggaaaatattaggttaaaattagggtatccaattgcttgaccagacaagttttagtaagaaagata 22625458  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 28125606 - 28125536
Alignment:
Q  28 atggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 97  Q
    ||||||||||| ||||| | | |||||||||||||| || |||||| || | |||||||||||||||||||    
T  28125606 atggagggaaaatattagggttaaattagggtatgagatagcttgaccagacaagctttagtaagaaagat 28125536  T

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