View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2224_low_2 (Length: 524)

Name: NF2224_low_2
Description: NF2224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2224_low_2
NF2224_low_2
[»] chr4 (23 HSPs)
chr4 (162-503)||(23408480-23408821)
chr4 (166-440)||(23415712-23415986)
chr4 (162-439)||(23453376-23453653)
chr4 (166-439)||(23868733-23869006)
chr4 (166-439)||(24307224-24307497)
chr4 (162-439)||(23402071-23402348)
chr4 (166-439)||(23885828-23886101)
chr4 (166-439)||(26832736-26833009)
chr4 (166-439)||(26434025-26434298)
chr4 (166-439)||(26435805-26436078)
chr4 (166-439)||(34662045-34662318)
chr4 (7-128)||(24307065-24307186)
chr4 (7-131)||(26832577-26832701)
chr4 (7-122)||(23401916-23402031)
chr4 (7-131)||(26433866-26433990)
chr4 (7-131)||(26435646-26435770)
chr4 (7-122)||(23408861-23408976)
chr4 (7-131)||(23416018-23416142)
chr4 (255-387)||(23451788-23451920)
chr4 (7-131)||(23868574-23868698)
chr4 (7-131)||(23885669-23885793)
chr4 (21-125)||(34662359-34662463)
chr4 (7-119)||(23453696-23453808)
[»] chr1 (6 HSPs)
chr1 (166-416)||(41670401-41670651)
chr1 (163-436)||(40795767-40796040)
chr1 (314-428)||(33216594-33216708)
chr1 (166-416)||(29391467-29391717)
chr1 (361-439)||(45576399-45576477)
chr1 (258-294)||(33216558-33216594)
[»] chr7 (3 HSPs)
chr7 (314-437)||(47317431-47317554)
chr7 (166-416)||(40180297-40180547)
chr7 (258-294)||(47317395-47317431)
[»] chr2 (2 HSPs)
chr2 (349-401)||(14715433-14715485)
chr2 (7-70)||(14715357-14715420)
[»] chr8 (1 HSPs)
chr8 (166-291)||(29684701-29684826)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 162 - 503
Target Start/End: Complemental strand, 23408821 - 23408480
Alignment:
Q  162 tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc 261  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||    
T  23408821 tgtagaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagcgatgggtatcatgaacagtttcatc 23408722  T
Q  262 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  23408721 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagac 23408622  T
Q  362 ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagacatttcgtttatgtttattggt 461  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  23408621 ttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttagacatttcgattatgtttattggt 23408522  T
Q  462 ttcttagtgttttaattttctgagttgtaatgaactaatggg 503  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  23408521 ttcttagtgttttaattttctgagttgtaatgaactaatggg 23408480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 166 - 440
Target Start/End: Complemental strand, 23415986 - 23415712
Alignment:
Q  166 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 265  Q
    |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  23415986 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg 23415887  T
Q  266 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23415886 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 23415787  T
Q  366 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagac 440  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||    
T  23415786 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttagac 23415712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 162 - 439
Target Start/End: Complemental strand, 23453653 - 23453376
Alignment:
Q  162 tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc 261  Q
    |||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||    
T  23453653 tgtagaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc 23453554  T
Q  262 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23453553 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagtc 23453454  T
Q  362 ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||    
T  23453453 ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttaga 23453376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 166 - 439
Target Start/End: Original strand, 23868733 - 23869006
Alignment:
Q  166 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 265  Q
    |||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23868733 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 23868832  T
Q  266 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 365  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23868833 atatcttcgagaaacttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgt 23868932  T
Q  366 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 439  Q
    ||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| || || |||||||    
T  23868933 tcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttaga 23869006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 166 - 439
Target Start/End: Original strand, 24307224 - 24307497
Alignment:
Q  166 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 265  Q
    ||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24307224 gaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 24307323  T
Q  266 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 365  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24307324 atatcttcgagaaactagctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgt 24307423  T
Q  366 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 439  Q
    |||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| || || |||||||    
T  24307424 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttaga 24307497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 162 - 439
Target Start/End: Original strand, 23402071 - 23402348
Alignment:
Q  162 tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc 261  Q
    |||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||    
T  23402071 tgtagaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc 23402170  T
Q  262 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23402171 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggc 23402270  T
Q  362 ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 439  Q
    |||||||||||||||||||||||||||||||||| || || || ||||| |||||||| |||||||| || |||||||    
T  23402271 ttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttaga 23402348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 166 - 439
Target Start/End: Original strand, 23885828 - 23886101
Alignment:
Q  166 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 265  Q
    |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  23885828 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg 23885927  T
Q  266 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23885928 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggcttgt 23886027  T
Q  366 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 439  Q
    |||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||||||| || |||||||    
T  23886028 tcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttaga 23886101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 166 - 439
Target Start/End: Original strand, 26832736 - 26833009
Alignment:
Q  166 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 265  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26832736 gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 26832835  T
Q  266 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 365  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  26832836 atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt 26832935  T
Q  366 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 439  Q
    ||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26832936 tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga 26833009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 166 - 439
Target Start/End: Original strand, 26434025 - 26434298
Alignment:
Q  166 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 265  Q
    |||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26434025 gaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 26434124  T
Q  266 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 365  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  26434125 atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt 26434224  T
Q  366 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 439  Q
    ||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26434225 tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga 26434298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 166 - 439
Target Start/End: Original strand, 26435805 - 26436078
Alignment:
Q  166 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 265  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26435805 gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 26435904  T
Q  266 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 365  Q
    ||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  26435905 atatcttcgagaaactcactcaagaatcttccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt 26436004  T
Q  366 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 439  Q
    ||| || ||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26436005 tctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttaga 26436078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 166 - 439
Target Start/End: Complemental strand, 34662318 - 34662045
Alignment:
Q  166 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 265  Q
    ||||| |||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  34662318 gaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctcaagcaaagccatgggtattatgaacagtttcatcaatg 34662219  T
Q  266 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 365  Q
    |||||||||||||||| ||||||||||| |||||||||||  | || ||||||||||| || || ||||| ||||||||||||||||| || || |||||    
T  34662218 atatcttcgagaagctcgctcaagaatcttccagacttgcaaggtataacaagaagccgacgataacttcgagggaaattcagactgctgttaggcttgt 34662119  T
Q  366 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 439  Q
    ||||||||| |||||||| ||||||||||| ||||| || ||||| ||||| || ||||||||||| |||||||    
T  34662118 tcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttaga 34662045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 24307065 - 24307186
Alignment:
Q  7 gagatgaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctac 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||    
T  24307065 gagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaggctcctgctgagaagaagccaaaggcaggaaagaagctac 24307164  T
Q  107 caaaggaaggtggttcagctgc 128  Q
    |||||||||||||||| |||||    
T  24307165 caaaggaaggtggttccgctgc 24307186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 26832577 - 26832701
Alignment:
Q  7 gagatgaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctac 106  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |    
T  26832577 gagaagaagccagcagagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccaaaggccggaaagaagcttc 26832676  T
Q  107 caaaggaaggtggttcagctgccgg 131  Q
    ||||||||||||||||||| |||||    
T  26832677 caaaggaaggtggttcagccgccgg 26832701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 23401916 - 23402031
Alignment:
Q  7 gagatgaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctac 106  Q
    |||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23401916 gagaagaagccagcggagaagaaacccgctgaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagccaaaggcaggaaagaagctac 23402015  T
Q  107 caaaggaaggtggttc 122  Q
    ||||||||||||||||    
T  23402016 caaaggaaggtggttc 23402031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 26433866 - 26433990
Alignment:
Q  7 gagatgaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctac 106  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |    
T  26433866 gagaagaagccagcagagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttc 26433965  T
Q  107 caaaggaaggtggttcagctgccgg 131  Q
    ||||||||||||||||||| |||||    
T  26433966 caaaggaaggtggttcagccgccgg 26433990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 26435646 - 26435770
Alignment:
Q  7 gagatgaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctac 106  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |    
T  26435646 gagaagaagccagcagagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttc 26435745  T
Q  107 caaaggaaggtggttcagctgccgg 131  Q
    ||||||||||||||||||| |||||    
T  26435746 caaaggaaggtggttcagccgccgg 26435770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 23408976 - 23408861
Alignment:
Q  7 gagatgaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctac 106  Q
    |||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  23408976 gagaagaagccagcggagaagaaacccgctgaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagcccaaggcaggaaagaagctac 23408877  T
Q  107 caaaggaaggtggttc 122  Q
    ||||||||||||||||    
T  23408876 caaaggaaggtggttc 23408861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 23416142 - 23416018
Alignment:
Q  7 gagatgaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctac 106  Q
    |||| ||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||    
T  23416142 gagaagaagccagcggagaagaaaccagctgaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggcagggaagaagctac 23416043  T
Q  107 caaaggaaggtggttcagctgccgg 131  Q
    |||||||||||||||||||||||||    
T  23416042 caaaggaaggtggttcagctgccgg 23416018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 255 - 387
Target Start/End: Complemental strand, 23451920 - 23451788
Alignment:
Q  255 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 354  Q
    ||||||||| |||||||| |||||||| ||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  23451920 tttcatcaacgatatctttgagaagctcgctcaagaatactccagacttgctcgctacaacaagaagccaacaatcacttcaagggaaattcagaccgca 23451821  T
Q  355 gtcagacttgttcttcctggtgaattggccaag 387  Q
    ||||| |||||||| || |||||||||||||||    
T  23451820 gtcaggcttgttctgcccggtgaattggccaag 23451788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 23868574 - 23868698
Alignment:
Q  7 gagatgaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctac 106  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| |    
T  23868574 gagaagaagccagcggagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttc 23868673  T
Q  107 caaaggaaggtggttcagctgccgg 131  Q
    ||||||||||||||||||| |||||    
T  23868674 caaaggaaggtggttcagccgccgg 23868698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 23885669 - 23885793
Alignment:
Q  7 gagatgaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctac 106  Q
    |||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| |    
T  23885669 gagaagaagccagcagagaagaaaccagctgaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttc 23885768  T
Q  107 caaaggaaggtggttcagctgccgg 131  Q
    ||||||||||||||||||| |||||    
T  23885769 caaaggaaggtggttcagccgccgg 23885793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 34662463 - 34662359
Alignment:
Q  21 agagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggt 120  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | |||    
T  34662463 agagaagaaacctgcagaggagaagaaatccaccgtcgccgagaaagctccggcagagaagaagccaaaggccggaaagaagcttccaaaggaaagcggt 34662364  T
Q  121 tcagc 125  Q
    |||||    
T  34662363 tcagc 34662359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 23453808 - 23453696
Alignment:
Q  7 gagatgaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctac 106  Q
    |||| ||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| |    
T  23453808 gagaagaagccagcggagaagaaacctgctgaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggctggaaagaagcttc 23453709  T
Q  107 caaaggaaggtgg 119  Q
    | |||||||||||    
T  23453708 ctaaggaaggtgg 23453696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 166 - 416
Target Start/End: Original strand, 41670401 - 41670651
Alignment:
Q  166 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 265  Q
    ||||| |||||||||||||| ||||| || || || || ||||| || |||||||||||||||||||| || ||||| || |||||||| ||||||||||    
T  41670401 gaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatcaatg 41670500  T
Q  266 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 365  Q
    ||||||| |||||||| ||||| ||||| |||||||||||  | |||||||||||||| |||||||||||  |||| || |||||||| ||  | |||||    
T  41670501 atatctttgagaagctcgctcaggaatcttccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgtcttgt 41670600  T
Q  366 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt 416  Q
    ||| || |||||| | || ||||||||||| ||||| || |||||||||||    
T  41670601 tctccccggtgaacttgctaagcatgctgtctctgagggaaccaaggctgt 41670651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 163 - 436
Target Start/End: Original strand, 40795767 - 40796040
Alignment:
Q  163 gtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca 262  Q
    |||||||| |||||||||||||| ||||| || || || || ||||| || |||||||| ||||| ||||| || ||||| || ||||||||||||||||    
T  40795767 gtagaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggaatctccagcaaggctatggggatcatgaacagtttcatca 40795866  T
Q  263 atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagact 362  Q
    |||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| || || ||||| ||  | || ||||||||||| ||  | ||    
T  40795867 atgacatctttgagaagctcgctcaggaatcatccagactcgctcgctacaacaagaaacctaccatcacctctcgtgagattcagactgctgttcgtct 40795966  T
Q  363 tgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctctt 436  Q
     |||||||| || ||| | |||||||| ||||| || || || ||||| || || ||||| |||||||||||||    
T  40795967 cgttcttcccggcgaacttgccaagcacgctgtctccgagggaaccaaagcagtcactaaatttacaagctctt 40796040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 314 - 428
Target Start/End: Original strand, 33216594 - 33216708
Alignment:
Q  314 acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggc 413  Q
    |||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || ||||||||    
T  33216594 acaagaagccaacaatcacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggc 33216693  T
Q  414 tgtgactaagtttac 428  Q
    |||||| ||||||||    
T  33216694 tgtgaccaagtttac 33216708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 166 - 416
Target Start/End: Original strand, 29391467 - 29391717
Alignment:
Q  166 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 265  Q
    ||||| || ||||| ||||| ||||| || || ||||| ||||| || || || ||||| ||   |||||| ||||| || |||||||||||||||||||    
T  29391467 gaaacctataagatttacatcttcaaggttctcaaacaggttcatcctgatataggtatttcttccaaagctatggggattatgaacagtttcatcaatg 29391566  T
Q  266 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 365  Q
    ||||||| ||||| || ||||| ||| | || ||| | ||||||||||||||||| || || || || || ||||| ||||| || || ||  |  | ||    
T  29391567 atatctttgagaaactcgctcaggaagcttctagattggctcgttacaacaagaaaccgacgattacgtcgagggagattcaaacggctgtgcgtttggt 29391666  T
Q  366 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt 416  Q
    |||||| ||||||||||| || ||||||||||| ||||| |||||||||||    
T  29391667 tcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgt 29391717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 439
Target Start/End: Original strand, 45576399 - 45576477
Alignment:
Q  361 cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 439  Q
    |||||||| || | ||||||||| ||||||| ||||||||| || ||||| |||||||| || || |||||||||||||    
T  45576399 cttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttaga 45576477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 33216558 - 33216594
Alignment:
Q  258 catcaatgatatcttcgagaagcttgctcaagaatca 294  Q
    ||||||||||||||||| |||||||||||||||||||    
T  33216558 catcaatgatatcttcgtgaagcttgctcaagaatca 33216594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 314 - 437
Target Start/End: Original strand, 47317431 - 47317554
Alignment:
Q  314 acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggc 413  Q
    |||||||||||||||||||||||||||||||||| ||||  ||||||||| |||||||||||||||||||||| |||| ||||||||| || ||||| ||    
T  47317431 acaagaagccaacaatcacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagc 47317530  T
Q  414 tgtgactaagtttacaagctctta 437  Q
    |||||| |||||||| || |||||    
T  47317531 tgtgaccaagtttactagttctta 47317554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 166 - 416
Target Start/End: Complemental strand, 40180547 - 40180297
Alignment:
Q  166 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 265  Q
    ||||| |||||||| ||||| ||||| || |||||||| ||||| || || || ||| | |||||||| || |||||||| |||||||||||||| || |    
T  40180547 gaaacctacaagatatacatcttcaaggttctgaaacaggttcatcctgatatcggtgtttcaagcaaggctatgggaatcatgaacagtttcattaacg 40180448  T
Q  266 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 365  Q
    ||||||| ||||| || ||||| ||||| ||  |  | ||| | || ||||||||||| || || ||||| ||||| ||||| ||||| || ||| | ||    
T  40180447 atatctttgagaaactcgctcaggaatcgtctcgtttggctaggtataacaagaagccgacgattacttctagggagattcaaactgctgttagattggt 40180348  T
Q  366 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt 416  Q
    ||||||||| |||||||| || ||||||||||||||||| || ||||||||    
T  40180347 tcttcctggagaattggctaaacatgctgtttctgaagggactaaggctgt 40180297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 47317395 - 47317431
Alignment:
Q  258 catcaatgatatcttcgagaagcttgctcaagaatca 294  Q
    ||||||||||||||||| |||||||||||||||||||    
T  47317395 catcaatgatatcttcgtgaagcttgctcaagaatca 47317431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 14715433 - 14715485
Alignment:
Q  349 actgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctga 401  Q
    |||||||| ||||||||||||||||| |||||||||||||||| ||| |||||    
T  14715433 actgcagtgagacttgttcttcctggagaattggccaagcatgttgtgtctga 14715485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 14715357 - 14715420
Alignment:
Q  7 gagatgaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctc 70  Q
    |||| ||||||||| |||||||||||||||||||||||||| | ||| ||||  ||||||||||    
T  14715357 gagaagaagccagctgagaagaaacccgcagaggagaagaaatacactgtcgaggagaaagctc 14715420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 166 - 291
Target Start/End: Original strand, 29684701 - 29684826
Alignment:
Q  166 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 265  Q
    ||||| |||||||| || |||||||| || || ||||||||||| || | ||||||| | ||||| ||||| |||||| | || ||||||||| | || |    
T  29684701 gaaacctacaagatatatatattcaaggttctcaaacaagttcatcctgccattggtgtttcaagtaaagctatgggagttattaacagtttcgtgaacg 29684800  T
Q  266 atatcttcgagaagcttgctcaagaa 291  Q
    |||||||  |||| || |||||||||    
T  29684801 atatctttaagaaactcgctcaagaa 29684826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University