View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2224_low_8 (Length: 327)
Name: NF2224_low_8
Description: NF2224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2224_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 35458807 - 35458939
Alignment:
| Q |
186 |
cggttaaaaatctagattagtggaagcttctctcacacatacgaatcattttttcaagtataatcttcaaaattcaactacagtgaaatcgaaacgcaaa |
285 |
Q |
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| T |
35458807 |
cggttaaaaatctagattagtggaagcttctctcacacatacgaataattttttcaagtataatcttcaaaattcaactacagtgaaatcgaaacgcaaa |
35458906 |
T |
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| Q |
286 |
cgcggtaccttgaaatagtttcttcgttcttct |
318 |
Q |
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| T |
35458907 |
cgcggtaccttgaaatagtttcttcgttcttct |
35458939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 35458635 - 35458725
Alignment:
| Q |
14 |
caaaaatcaccgattacaaatcaattttgcaaatatttcatcagaattcagttttatagtttcaatctggaaacgtaattccacaacaagc |
104 |
Q |
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| T |
35458635 |
caaaaatcaccgattacaaatcaattttgcaaatatttcatcagaattcagttttatagtttcaatctggaaacgtaattccacaacaagc |
35458725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 40849219 - 40849272
Alignment:
| Q |
51 |
tcatcagaattcagttttatagtttcaatctggaaacgtaattccacaacaagc |
104 |
Q |
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| T |
40849219 |
tcatcagaattcagttttataatctcattctggaaacataattccataacaagc |
40849272 |
T |
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