View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2225-2-Insertion-10 (Length: 602)

Name: NF2225-2-Insertion-10
Description: NF2225-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2225-2-Insertion-10
NF2225-2-Insertion-10
[»] chr8 (8 HSPs)
chr8 (9-484)||(289302-289777)
chr8 (9-484)||(9503929-9504418)
chr8 (495-590)||(289042-289137)
chr8 (23-202)||(266899-267078)
chr8 (23-202)||(648843-649022)
chr8 (23-202)||(834578-834757)
chr8 (517-578)||(9503379-9503440)
chr8 (517-578)||(9503685-9503746)
[»] chr7 (2 HSPs)
chr7 (14-234)||(12862252-12862472)
chr7 (269-361)||(12862513-12862603)
[»] chr1 (3 HSPs)
chr1 (9-210)||(141257-141458)
chr1 (9-214)||(166993-167198)
chr1 (9-213)||(18212855-18213059)
[»] chr3 (1 HSPs)
chr3 (14-169)||(2292732-2292887)
[»] chr6 (2 HSPs)
chr6 (140-302)||(19821571-19821733)
chr6 (140-302)||(19886673-19886835)
[»] chr2 (2 HSPs)
chr2 (14-186)||(18603517-18603689)
chr2 (21-70)||(19385950-19385999)


Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 9 - 484
Target Start/End: Complemental strand, 289777 - 289302
Alignment:
9 cattaagtatggcagcaaaaccattgaagctcctgttgtaacttcgaactaagcgattttctgcattgctaccatcaatgatttggtgcaacatgctttg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
289777 cattaagtatggcagcaaaaccattgaagctcctgttgtaacttcgaactaagcgattttctgcattgctaccatcaatgatttgttgcaacatgctttg 289678  T
109 atgatgagaagttggataatatgatgttcctttagaaagtgagcccatgtatactatgtaagttttactgctttcatcatcactttctatggcatcgcac 208  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
289677 atgatgagaggttggataatatgatgttcctttagaaagtgagcccatgtatactatgtaagttttactgctttcatcatcactttctatggcatcgcac 289578  T
209 accaagaaaattattgataacaaaacaacagatacaaatatgaataaaatagcattatatttgaccattgtttgcatttgtgaaatagtgaatagtttgc 308  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
289577 accaagataattattgataacaaaacaacagatacaaatatgaataaaatagcattatatttgaccattgtttgcatttgtgaaatagtgaatagtttgc 289478  T
309 tcaaacccaaacaatgtatgtatgctatatacacacaagaaagtccaaattatatctatagtcaatgatattaaaatttcactttcaaaacaaaatcatg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
289477 tcaaacccaaacaatgtatgtatgctatatacacacaagaaagtccaaattatatctatagtcaatgatattaaaatttcactttcaaaacaaaatcatg 289378  T
409 nnnnnnnncctctaaataaattattatatagatggaaaaggaaatattttcaattattaagaaaagagtagcttta 484  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
289377 aaaaaaaccctctaaataaattattatatagatggaaaaggaaatattttcaattattaagaaaagagtagcttta 289302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 9 - 484
Target Start/End: Complemental strand, 9504418 - 9503929
Alignment:
9 cattaagtatggcagcaaaaccattgaagctcctgttgtaacttcgaactaagcgattttctgcattgctaccatcaatgatttggtgcaacatgctttg 108  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||  |||| ||||||||||||| ||| |||||||||||  |    
9504418 cattaagtatggcagcaaaaccactgaagctcctgttgtaacttcgaactaggtgattttccacattactaccatcaatgacttgttgcaacatgctgag 9504319  T
109 atgatgagaagttggataatatgatgttcctttagaaagtgagcccatgtatactatgtaagttttactgctttcatcatcactttctatggcatcgcac 208  Q
    ||||||||| ||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| |    
9504318 atgatgagaggttggataatatgatgttcctttaggaattgagcccatgtacactatgtaagttttactgctttcatcatcactttcgaaggcatcgctc 9504219  T
209 accaagaaaattattgataacaaaacaacagatacaaatatgaataaaatagcattatatttgaccattgtttgcatttgtgaaatagtgaatagtttgc 308  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| || |||||||||    
9504218 accaagaaaattattgataaccaaacaacagatacaaatatgaataaaatagcattatatttaaccattgttttcatttgtgaaataatggatagtttgc 9504119  T
309 tca----aacccaaacaatgtatgtatgctatatacacacaagaaagtccaaattatatc-tatagtcaatgata---------ttaaaatttcactttc 394  Q
    |||    |||||||||||||| ||||| |||||||  ||||||||||||||||||||||| ||||||||||||||         || |||||||||||||    
9504118 tcaaaccaacccaaacaatgtgtgtatactatatagtcacaagaaagtccaaattatatcatatagtcaatgataataatttgctttaaatttcactttc 9504019  T
395 aaaacaaaatcatgnnnnnnnncctctaaataaattattatatagatggaaaaggaaatattttcaattattaagaaaagagtagcttta 484  Q
    ||||||||||||||        ||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||||||||    
9504018 aaaacaaaatcatgaacaaatccctctaaataaattattatatagatcgaaatggaaatatttttaattattaagaaatgagtagcttta 9503929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 495 - 590
Target Start/End: Complemental strand, 289137 - 289042
Alignment:
495 cttatgaatgtgaccggatggtgtaaatggtaataaaacaacagtgattcataaagtaatacatcatttgatatatgtatgatataaatacttgac 590  Q
    ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
289137 cttataaatgtgaccggatggtgtaaatggtaaaaaaacaatagtgattcataaagtaatacatcatttgatatatgtatgatataaatacttgac 289042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 267078 - 266899
Alignment:
23 gcaaaaccattgaagctcctgttgtaacttcgaactaagcgattttctgcattgctaccatcaatgatttggtgcaacatgctttgatgatgagaagttg 122  Q
    |||||||||||||| || || |||||||||||||||||  ||||||||  ||  ||||||||||| | ||| |||| || | || |||| ||||| ||||    
267078 gcaaaaccattgaaacttctcttgtaacttcgaactaaatgattttctatatcactaccatcaataacttgttgcagcaagtttagatggtgagaggttg 266979  T
123 gataatatgatgttcctttagaaagtgagcccatgtatactatgtaagttttactgctttcatcatcactttctatggca 202  Q
    || ||||||||| ||| |||  |||||| ||||| || || |||| |  |||| ||||||||||| ||||||| ||||||    
266978 gagaatatgatgctcccttacgaagtgaacccatatacacaatgtgaagtttattgctttcatcaccactttcaatggca 266899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 648843 - 649022
Alignment:
23 gcaaaaccattgaagctcctgttgtaacttcgaactaagcgattttctgcattgctaccatcaatgatttggtgcaacatgctttgatgatgagaagttg 122  Q
    |||||||||||||| || || |||||||||||||||||  ||||||||  ||  ||||||||||| | ||| |||| || | || |||| ||||| ||||    
648843 gcaaaaccattgaaacttctcttgtaacttcgaactaaatgattttctatatcactaccatcaataacttgttgcagcaagtttagatggtgagaggttg 648942  T
123 gataatatgatgttcctttagaaagtgagcccatgtatactatgtaagttttactgctttcatcatcactttctatggca 202  Q
    || ||||||||| ||| |||  |||||| ||||| || || |||| |  |||| ||||||||||| ||||||| ||||||    
648943 gagaatatgatgctcccttacgaagtgaacccatatacacaatgtgaagtttattgctttcatcaccactttcaatggca 649022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 834578 - 834757
Alignment:
23 gcaaaaccattgaagctcctgttgtaacttcgaactaagcgattttctgcattgctaccatcaatgatttggtgcaacatgctttgatgatgagaagttg 122  Q
    |||||||||||||| || || |||||||||||||||||  ||||||||  ||  ||||||||||| | ||| |||| || | || |||| ||||| ||||    
834578 gcaaaaccattgaaacttctcttgtaacttcgaactaaatgattttctatatcactaccatcaataacttgttgcagcaagtttagatggtgagaggttg 834677  T
123 gataatatgatgttcctttagaaagtgagcccatgtatactatgtaagttttactgctttcatcatcactttctatggca 202  Q
    || ||||||||| ||| |||  |||||| ||||| || || |||| |  |||| ||||||||||| ||||||| ||||||    
834678 gagaatatgatgctcccttacgaagtgaacccatatacacaatgtgaagtttattgctttcatcaccactttcaatggca 834757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 517 - 578
Target Start/End: Complemental strand, 9503440 - 9503379
Alignment:
517 gtaaatggtaataaaacaacagtgattcataaagtaatacatcatttgatatatgtatgata 578  Q
    ||||||||||| ||||||| ||| ||||||||||||||| ||||||| ||||||||||||||    
9503440 gtaaatggtaaaaaaacaatagtaattcataaagtaatatatcattttatatatgtatgata 9503379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 517 - 578
Target Start/End: Original strand, 9503685 - 9503746
Alignment:
517 gtaaatggtaataaaacaacagtgattcataaagtaatacatcatttgatatatgtatgata 578  Q
    |||||||| || ||||||| ||||||||||||||||||| ||||||| ||||||||||||||    
9503685 gtaaatggcaaaaaaacaatagtgattcataaagtaatatatcattttatatatgtatgata 9503746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 12862252 - 12862472
Alignment:
14 agtatggcagcaaaaccattgaagctcctgttgtaacttcgaactaagcgattttctgcattgctaccatcaatgatttggtgcaacatgctttgatgat 113  Q
    |||| ||| |||||||||||||| ||  | || ||||||||||||||| ||||||||   || ||||||||||| | ||| || || ||| |  ||||||    
12862252 agtacggcggcaaaaccattgaaacttttcttataacttcgaactaagtgattttctatgttactaccatcaataacttgttgtaatatgttgagatgat 12862351  T
114 gagaagttggataatatgatgttcctttagaaagtgagcccatgtatactatgtaagttttactgctttcatcatcactttctatggcatcgcacaccaa 213  Q
    |||| |||||| |||||||||||| ||||| |||||||||||| ||||| ||||||  |||||  | ||||||||||||||   ||||||| ||||||||    
12862352 gagaggttggaaaatatgatgttcttttaggaagtgagcccatatatacaatgtaaagtttaccaccttcatcatcacttttagtggcatcacacaccaa 12862451  T
214 gaaaattattgataacaaaac 234  Q
     |||||||||||| |||||||    
12862452 aaaaattattgatgacaaaac 12862472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 269 - 361
Target Start/End: Original strand, 12862513 - 12862603
Alignment:
269 ttgaccattgtttgcatttgtgaaatagtgaatagtttgctcaaacccaaacaatgtatgtatgctatatacacacaagaaagtccaaattat 361  Q
    |||||||||||||| ||||||||||||  ||||||||  | |||||| ||||||||| || ||  |||||  |||||| ||||||||||||||    
12862513 ttgaccattgtttgtatttgtgaaatatggaatagttatcccaaaccgaaacaatgtctgcatattatat--acacaataaagtccaaattat 12862603  T

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Target: chr1 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 141257 - 141458
Alignment:
9 cattaagtatggcagcaaaaccattgaagctcctgttgtaacttcgaactaagcgattttctgcattgctaccatcaatgatttggtgcaacatgctttg 108  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||   |  |||||||| || |  || ||||||| |||       
141257 cattgagtatggcagcaaaaccattgaaactccttttgtaacttcgaactaagcgattttctatgtcactaccatccataacatgttgcaacaagctgat 141356  T
109 atgatgagaagttggataatatgatgttcctttagaaagtgagcccatgtatactatgtaagttttactgctttcatcatcactttctatggcatcgcac 208  Q
    ||| ||||| |||||  ||||||||| ||| |||| ||||||||||||||| || ||||||  |||||| ||||||||  ||||||| || ||||| |||    
141357 atggtgagaggttggggaatatgatgctcccttaggaagtgagcccatgtacacgatgtaaagtttactactttcatcgccactttcaatagcatcacac 141456  T
209 ac 210  Q
    ||    
141457 ac 141458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 166993 - 167198
Alignment:
9 cattaagtatggcagcaaaaccattgaagctcctgttgtaacttcgaactaagcgattttctgcattgctaccatcaatgatttggtgcaacatgctttg 108  Q
    |||| |||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||   |  ||  |||| || |  || ||||||| |||       
166993 cattgagtatgacagcaaaaccattgaaactcctcttgtaacttcgaactaagcgattttctatgtcactctcatccataacatgttgcaacaagctgac 167092  T
109 atgatgagaagttggataatatgatgttcctttagaaagtgagcccatgtatactatgtaagttttactgctttcatcatcactttctatggcatcgcac 208  Q
    ||| ||||| |||||| ||||||||| ||| || | ||||||||||||||| || ||||||  |||||| ||||||||  ||||||| || ||||| |||    
167093 atggtgagaggttggagaatatgatgctccctttggaagtgagcccatgtacacgatgtaaagtttactactttcatcgccactttcaatagcatcacac 167192  T
209 accaag 214  Q
     |||||    
167193 gccaag 167198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 18213059 - 18212855
Alignment:
9 cattaagtatggcagcaaaaccattgaagctcctgttgtaacttcgaactaagcgattttctgcattgctaccatcaatgatttggtgcaacatgctttg 108  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||  |||||| | |||||| ||   |||||||||||||  || ||||||| | |       
18213059 cattgagtatggcagcaaaaccattgaaactcctattgtaacttctcactaagtggttttctacaccactaccatcaatgacatgttgcaacaagttgat 18212960  T
109 atgatgagaagttggataatatgatgttcctttagaaagtgagcccatgtatactatgtaagttttactgctttcatcatcactttctatggcatcgcac 208  Q
    ||| ||||| |||||  ||||||||  |||||| | ||||||||||||||| || ||||||  |||||| ||||  ||| |||||||  | ||||||||     
18212959 atggtgagaggttggggaatatgattctccttttggaagtgagcccatgtacacaatgtaaagtttactacttttttcaccactttcagtagcatcgcat 18212860  T
209 accaa 213  Q
    |||||    
18212859 accaa 18212855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 2292887 - 2292732
Alignment:
14 agtatggcagcaaaaccattgaagctcctgttgtaacttcgaactaagcgattttctgcattgctaccatcaatgatttggtgcaacatgctttgatgat 113  Q
    |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||   | |||| ||||||| | ||| || | || |||  |||| |    
2292887 agtatggcggcaaaaccattgaaactcctcttgtaacttcgaactaagcgattttctatgtcgctatcatcaataacttgttgtagcaagctgagatggt 2292788  T
114 gagaagttggataatatgatgttcctttagaaagtgagcccatgtatactatgtaa 169  Q
    |||| |||||  ||||||||  | | |||| |||||||||||||||||| ||||||    
2292787 gagaggttggggaatatgattcttcgttaggaagtgagcccatgtatacaatgtaa 2292732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 140 - 302
Target Start/End: Complemental strand, 19821733 - 19821571
Alignment:
140 ttagaaagtgagcccatgtatactatgtaagttttactgctttcatcatcactttctatggcatcgcacaccaagaaaattattgataacaaaacaacag 239  Q
    |||| |||||||||||||||||| |||| |  ||||| |||||| |||  | || | |||||||| |||||||| ||||||||||||  | |||||| |     
19821733 ttaggaagtgagcccatgtatacaatgtgaagtttaccgctttcttcactatttgcaatggcatcacacaccaacaaaattattgatgtccaaacaaaaa 19821634  T
240 atacaaatatgaataaaatagcattatatttgaccattgtttgcatttgtgaaatagtgaata 302  Q
    | ||||| |  ||||||  |  |||||||||| |||||||||| ||||||||||  |||||||    
19821633 acacaaagaataataaagcaatattatatttggccattgtttgtatttgtgaaagggtgaata 19821571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 302
Target Start/End: Complemental strand, 19886835 - 19886673
Alignment:
140 ttagaaagtgagcccatgtatactatgtaagttttactgctttcatcatcactttctatggcatcgcacaccaagaaaattattgataacaaaacaacag 239  Q
    |||| |||||||||||||||||| |||| |  ||||| |||||| |||  | || | |||||||| |||| ||| ||||||||||||  | |||||| |     
19886835 ttaggaagtgagcccatgtatacaatgtgaagtttacagctttcttcactatttgcaatggcatcacacatcaaaaaaattattgatgtccaaacaaaaa 19886736  T
240 atacaaatatgaataaaatagcattatatttgaccattgtttgcatttgtgaaatagtgaata 302  Q
    | |  || |  || ||||||  |||||||||| |||||||||| ||||||||||| |||||||    
19886735 acaataagaataaaaaaataatattatatttggccattgtttgtatttgtgaaatggtgaata 19886673  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 18603689 - 18603517
Alignment:
14 agtatggcagcaaaaccattgaagctcctgttgtaacttcgaactaagcgattttctgcattgctaccatcaatgatttggtgcaacatgctttgatgat 113  Q
    |||| |||||||||||||||||| || || |||||||||||||| ||| ||||||||   |  |||||||| ||||  || ||||||| |||  ||||||    
18603689 agtacggcagcaaaaccattgaaacttctcttgtaacttcgaaccaagagattttctatgtcactaccatccatgacatgttgcaacaagctgagatgat 18603590  T
114 gagaagttggataatatgatg-ttcctttagaaagtgagcccatgtatactatgtaagttttactgctttcatc 186  Q
    ||||  ||||  ||||||| | ||||||| | |||||| |||||||| || |||| |  |||||||||||||||    
18603589 gagatcttggggaatatgaggcttccttt-ggaagtgaacccatgtacacaatgtgaagtttactgctttcatc 18603517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 19385999 - 19385950
Alignment:
21 cagcaaaaccattgaagctcctgttgtaacttcgaactaagcgattttct 70  Q
    |||||||||||||||| || || ||||||||| |||||||||||||||||    
19385999 cagcaaaaccattgaaacttctcttgtaactttgaactaagcgattttct 19385950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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