View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2225-2-Insertion-15 (Length: 170)
Name: NF2225-2-Insertion-15
Description: NF2225-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225-2-Insertion-15 |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 7 - 170
Target Start/End: Complemental strand, 4397954 - 4397791
Alignment:
| Q |
7 |
attgacgaccatctccggttgcctccaaacaatcacctccgaccactagttccattaatcattattcacattattaatgttgattgagtaatcatttgtt |
106 |
Q |
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| T |
4397954 |
attgacgaccatctccggttgcctccaaacaatcacctccgaccactagttccattaatcattattcacattattaatgttgattgagtactcatttgtt |
4397855 |
T |
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| Q |
107 |
gcaccttaagccttcctgactgctttgttgttggcggatgcatgtccttcacgattaatcctcc |
170 |
Q |
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| T |
4397854 |
gcaccttaagccttcctgactgctttgttgctggcggatgcatgtccttcacgattaatcctcc |
4397791 |
T |
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Target: chr3 (Bit Score: 47; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 84 - 170
Target Start/End: Original strand, 16284699 - 16284785
Alignment:
| Q |
84 |
tgttgattgagtaatcatttgttgcaccttaagccttcctgactgctttgttgttggcggatgcatgtccttcacgattaatcctcc |
170 |
Q |
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| T |
16284699 |
tgttgatggagtagtcgtttgatgcaccttaagccttcctgactgctcagttgtcggcgggtgcaggtccttcacgattaattctcc |
16284785 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 1798792 - 1798870
Alignment:
| Q |
92 |
gagtaatcatttgttgcaccttaagccttcctgactgctttgttgttggcggatgcatgtccttcacgattaatcctcc |
170 |
Q |
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| T |
1798792 |
gagtagtcgtttgttgcaccttaagccgtcctgactgcttggttgccgacgggttcatgtctttcacgattaatcctcc |
1798870 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 26500719 - 26500641
Alignment:
| Q |
92 |
gagtaatcatttgttgcaccttaagccttcctgactgctttgttgttggcggatgcatgtccttcacgattaatcctcc |
170 |
Q |
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| T |
26500719 |
gagtagtcgtttgttgcaccttaagccttccttactggtcagttgccgacggctgcaggtccttaacgattaatcctcc |
26500641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.0000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 39368567 - 39368636
Alignment:
| Q |
101 |
tttgttgcaccttaagccttcctgactgctttgttgttggcggatgcatgtccttcacgattaatcctcc |
170 |
Q |
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| T |
39368567 |
tttgttgcacctttagccgtcctgactgctcagttttcggcgggtgcaggtccttcacgattaatcctcc |
39368636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 29685435 - 29685522
Alignment:
| Q |
83 |
atgttgattgagtaatcatttgttgcaccttaagccttcctgactgctttgttgttggcggatgcatgtccttcacgattaatcctcc |
170 |
Q |
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| T |
29685435 |
atgttgacggagtagtcgtttgtcgcaccttaagccatcacgaccgctctgttgtcggcgcttgcaggtccttcacgattaatcctcc |
29685522 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 4391249 - 4391327
Alignment:
| Q |
92 |
gagtaatcatttgttgcaccttaagccttcctgactgctttgttgttggcggatgcatgtccttcacgattaatcctcc |
170 |
Q |
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| T |
4391249 |
gagtagtcgtttgttgcaacttaagccttcatgaccgctcagttgtcggcggctgcagatccttcacgattaatcctcc |
4391327 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 15209710 - 15209644
Alignment:
| Q |
92 |
gagtaatcatttgttgcaccttaagccttcctgactgctttgttgttggcggatgcatgtccttcac |
158 |
Q |
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| T |
15209710 |
gagtagtcgtttgttgcatcttaagccttcctgcctgctcagttgtcggcgggtgcaggtccttcac |
15209644 |
T |
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