View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2225-2-Insertion-5 (Length: 917)

Name: NF2225-2-Insertion-5
Description: NF2225-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2225-2-Insertion-5
NF2225-2-Insertion-5
[»] chr4 (2 HSPs)
chr4 (8-917)||(49653309-49654205)
chr4 (10-95)||(6224678-6224763)
[»] chr2 (2 HSPs)
chr2 (594-677)||(14382068-14382151)
chr2 (23-138)||(14381849-14381964)


Alignment Details
Target: chr4 (Bit Score: 750; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 750; E-Value: 0
Query Start/End: Original strand, 8 - 917
Target Start/End: Complemental strand, 49654205 - 49653309
Alignment:
Q  8 ctttactttccctggaagattctccggcaaaacctcggcgtgttttccagctttggcaagtttccttatcagagtctcgagagcaacatttccggtgact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49654205 ctttactttccctggaagattctccggcaaaacctcggcgtgttttccagctttggcaagtttccttatcagagtctcgagagcaacatttccggtgact 49654106  T
Q  108 gttactttattctgttgtggatcgattgttgttgtaaaaactcctgcattgcaaatgttatgaaacaccccaaaattttgtcaccgtaacaacacaaaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49654105 gttactttattctgttgtggatcgattgttgttgtaaaaactcctgcattgcaaatgttatgaaacaccccaaaattttgtcaccgtaacaacacaaaaa 49654006  T
Q  208 tggttaattaataagaatcacatacagaaacacgaatacaagacgcaacacaaacactgtcactgaccgcatttaaaaaatagaagtagtatttcaattt 307  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  49654005 tggttaattaataagaatcaaatacagaaacacgaatacaagacacaacacaaacactgtcactgaccgcatttaaaaaata--agtagtatttcaattt 49653908  T
Q  308 aatcacatgtatgtgttgtgttggtgtttaacacggacaccaacacatgtgagacattaacatgtgttggacaccatacacgtcttca------ggtgtc 401  Q
    ||||||||||||||||||||| ||                      |||||||||| ||||| |||||||||||||||||||||||||      ||||||    
T  49653907 aatcacatgtatgtgttgtgtcgg----------------------atgtgagacactaacacgtgttggacaccatacacgtcttcaatctaaggtgtc 49653830  T
Q  402 gagggttacattgtacttattagagcaccagccaccaaaccatacagtgttttagtggtaagaaaagggtaaatggaaatgacagtgattttgggtttag 501  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49653829 gagtgctacattgtacttattagagcaccagccaccaaaccatacagtgttttagtggtaagaaaagggtaaatggaaatgacagtgattttgggtttag 49653730  T
Q  502 caaagtaaga---tttaagacttgtaatctttccatgcatgaaatgaaaaagaactgaatagttgaaaacttaagttagtttgatttataagctcagtac 598  Q
    ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49653729 caaagtaagaagatttaagacttgtaatctttccatgcatgaaatgaaaaagaactgaatagttgaaaacttaagttagtttgatttataagctcagtac 49653630  T
Q  599 catcaatgctctgaagaactttctttactttcctcctacaaccttcacagtggatagaaaccttcaagaaccatgtctgtgaaacaaaaccaactttagc 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49653629 catcaatgctctgaagaactttctttactttcctcctacaaccttcacagtggatagaaaccttcaagaaccatgtctgtgaaacaaaaccaagtttagc 49653530  T
Q  699 ttacaaaataaaaaacaaagaaagattttgacaatagggtgtgattgttgggttgaagtaacatgttacctgatacttcaaaggttgtgaggtagcatcc 798  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49653529 ttacaaaataaaaaacaaagaaagattttgacaatagggtgtgattgttgggttgaagtaacatgttacctgatacttcaaaggttgtgaggtagcatcc 49653430  T
Q  799 attagagagaagtggttgggagagtgagagggaattggaaacttgaaatcaaaatgaaagtgagatg-ggaaaatgccaagaaaac-aaggaaacaagcc 896  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||    
T  49653429 attagagagaagtggttgggagagtgagagggaattggaaacttgaaatcaaaatgaaagtgagaagaggaaaatgccaagaaaacaaaggaaacaagcc 49653330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 6224763 - 6224678
Alignment:
Q  10 ttactttccctggaagattctccggcaaaacctcggcgtgttttccagctttggcaagtttccttatcagagtctcgagagcaaca 95  Q
    |||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||    
T  6224763 ttactttcccaggaagattctctggcaaaacctcggcgtgatttccagctttggcaagtttccttatcaaagtctcaagagcaaca 6224678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 594 - 677
Target Start/End: Original strand, 14382068 - 14382151
Alignment:
Q  594 agtaccatcaatgctctgaagaactttctttactttcctcctacaaccttcacagtggatagaaaccttcaagaaccatgtctg 677  Q
    |||||||||||||| ||  | |||||||||||||||| | || ||||||||||||||||||||||| |||||||||||||||||    
T  14382068 agtaccatcaatgcgctttaaaactttctttactttctttctgcaaccttcacagtggatagaaactttcaagaaccatgtctg 14382151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 14381849 - 14381964
Alignment:
Q  23 aagattctccggcaaaacctcggcgtgttttccagctttggcaagtttccttatcagagtctcgagagcaacatttccggtgactgttactttattctgt 122  Q
    ||||||||||||| ||| ||| ||||  |||||||||||| | || |||||||  || ||||| | | |||||||||| || ||||||||||| |  |||    
T  14381849 aagattctccggccaaatctcagcgtactttccagctttgaccagcttccttaaaagggtctcaacaccaacatttccagttactgttactttttgttgt 14381948  T
Q  123 tgtggatcgattgttg 138  Q
    |||| ||| |||||||    
T  14381949 tgtgaatcaattgttg 14381964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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