View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2225-3-Insertion-14 (Length: 473)
Name: NF2225-3-Insertion-14
Description: NF2225-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225-3-Insertion-14 |
 | |
|
| [»] scaffold0209 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 246 - 435
Target Start/End: Original strand, 5237095 - 5237284
Alignment:
| Q |
246 |
tattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatca |
345 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5237095 |
tattacagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatca |
5237194 |
T |
|
| Q |
346 |
ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttt |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5237195 |
ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttt |
5237284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 246 - 437
Target Start/End: Original strand, 5241865 - 5242056
Alignment:
| Q |
246 |
tattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatca |
345 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5241865 |
tattacagaatgatattgatgatagcaaaatcacttgaattgttattagttgttggacaagtaacttagcttaggatattgtttctctatagttagatca |
5241964 |
T |
|
| Q |
346 |
ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttttg |
437 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5241965 |
ttgtagcttacaatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttttg |
5242056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 245 - 437
Target Start/End: Original strand, 10635876 - 10636068
Alignment:
| Q |
245 |
ttattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatc |
344 |
Q |
| |
|
|||||| ||||||||||||||||||| || ||||| ||||||||||||| |||||||||||||||||| |||||||||||| | ||||||||||||||| |
|
|
| T |
10635876 |
ttattacagaatgatattgatgatagtaatatcacatgaattgttattacttgctggacaagtaactttacttaggatattgatactctatagttagatc |
10635975 |
T |
|
| Q |
345 |
attgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttttg |
437 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
10635976 |
attatagcttaccatactattagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatttcattccttttcttttg |
10636068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 246 - 437
Target Start/End: Original strand, 10655262 - 10655453
Alignment:
| Q |
246 |
tattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatca |
345 |
Q |
| |
|
||||| ||||||||||||||||||| || ||||| ||||||||||||| |||||||||||||||||| |||||||||||| | |||||||||||||||| |
|
|
| T |
10655262 |
tattacagaatgatattgatgatagtaatatcacatgaattgttattacttgctggacaagtaactttacttaggatattgatactctatagttagatca |
10655361 |
T |
|
| Q |
346 |
ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttttg |
437 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
10655362 |
ttatagcttaccatactactagttattagtatatatacttattgtaagctctattcttagtaatgagaattcatttcattccttttcttttg |
10655453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 246 - 437
Target Start/End: Original strand, 10869407 - 10869598
Alignment:
| Q |
246 |
tattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatca |
345 |
Q |
| |
|
||||| ||||||||||||||||||| || ||||| ||||||||||||| |||||||||||||||||| |||||||||||| | |||||||||||||||| |
|
|
| T |
10869407 |
tattacagaatgatattgatgatagtaatatcacatgaattgttattacttgctggacaagtaactttacttaggatattgatactctatagttagatca |
10869506 |
T |
|
| Q |
346 |
ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttttg |
437 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
10869507 |
ttatagcttaccatactactagttattagtatatatacttattgtaagctctattcttagtaatgagaattcatttcattccttttcttttg |
10869598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 5237474 - 5237512
Alignment:
| Q |
435 |
ttgttttgattgattttcttcaatcattgttatactctg |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5237474 |
ttgttttgattgattttcttcaatcattgttatactctg |
5237512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 10636256 - 10636294
Alignment:
| Q |
435 |
ttgttttgattgattttcttcaatcattgttatactctg |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10636256 |
ttgttttgattgattttcttcaatcattgttatactctg |
10636294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 246 - 437
Target Start/End: Original strand, 14817323 - 14817514
Alignment:
| Q |
246 |
tattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatca |
345 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14817323 |
tattacagaatgatattgatgatagcaaaatcacttgaattgttattagttgttggacaagtaacttagcttaggatattgtttctctatagttagatca |
14817422 |
T |
|
| Q |
346 |
ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttttg |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14817423 |
ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttttg |
14817514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 246 - 422
Target Start/End: Original strand, 14812557 - 14812733
Alignment:
| Q |
246 |
tattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatca |
345 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14812557 |
tattacagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctttatagttagatca |
14812656 |
T |
|
| Q |
346 |
ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatc |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812657 |
ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatc |
14812733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 14812932 - 14812970
Alignment:
| Q |
435 |
ttgttttgattgattttcttcaatcattgttatactctg |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812932 |
ttgttttgattgattttcttcaatcattgttatactctg |
14812970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 246 - 416
Target Start/End: Original strand, 2357487 - 2357657
Alignment:
| Q |
246 |
tattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatca |
345 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||||||| ||||||||| ||||||||||||||||| ||||||||| |||||||||||| |||||||||| |
|
|
| T |
2357487 |
tattacagaatgatattaatgatagtgaaatcacttgatttgttattacttgctggacaagtaactcagcttaggacattgtttctctagagttagatca |
2357586 |
T |
|
| Q |
346 |
ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaatt |
416 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2357587 |
ttatagcttaccatacttctagttattagtatatatacttgttgtaagctctattctttgtaatgagaatt |
2357657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 246 - 416
Target Start/End: Original strand, 2362082 - 2362252
Alignment:
| Q |
246 |
tattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatca |
345 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||||||| ||||||||| ||||||||||||||||| ||||||||| |||||||||| | |||||||||| |
|
|
| T |
2362082 |
tattacagaatgatattaatgatagtgaaatcacttgatttgttattacttgctggacaagtaactcagcttaggacattgtttctccagagttagatca |
2362181 |
T |
|
| Q |
346 |
ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaatt |
416 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2362182 |
ttatagcttaccatacttctagttattagtatatatacttgttgtaagctctattctttgtaatgagaatt |
2362252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 2357864 - 2357902
Alignment:
| Q |
435 |
ttgttttgattgattttcttcaatcattgttatactctg |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2357864 |
ttgttttgattgattttcttcaatcattgttatactctg |
2357902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 33118628 - 33118504
Alignment:
| Q |
64 |
aaatttgaaaatttgttatgtggtgatatacatattttggtgggaaaatgtgcatatataatgtaaaaactaacaactataggtgaaagaaagaaaaaag |
163 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33118628 |
aaattttaaaatttgttatgtggtgatatacatattttggtgggaaaatgtgcatatataatgtaaaaactaacaactataggtgaaagaaggaaaaaag |
33118529 |
T |
|
| Q |
164 |
gttcaaacatccataagaacatgaa |
188 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
33118528 |
gttcaaacatccataagaacatgaa |
33118504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 33118657 - 33118617
Alignment:
| Q |
6 |
cataatatacataataacatcgatttgcaaaattttaaaat |
46 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33118657 |
cataatatgcataataacatcgatttgcaaaattttaaaat |
33118617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 245 - 358
Target Start/End: Original strand, 495249 - 495362
Alignment:
| Q |
245 |
ttattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatc |
344 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
495249 |
ttattacagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagtttaggatattgtttctctatagttagatc |
495348 |
T |
|
| Q |
345 |
attgtagcttacca |
358 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
495349 |
attgtagcttacca |
495362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 325 - 437
Target Start/End: Original strand, 27377 - 27489
Alignment:
| Q |
325 |
tgtttctctatagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcat |
424 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
27377 |
tgttcctctatagttagatcattatagcttaccatacatcttgttattagtatatatacttgttgtaagctctattctaagtaatgagaattcatttcat |
27476 |
T |
|
| Q |
425 |
tccctttcttttg |
437 |
Q |
| |
|
||| |||| |||| |
|
|
| T |
27477 |
tccttttcctttg |
27489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 325 - 437
Target Start/End: Original strand, 614593 - 614705
Alignment:
| Q |
325 |
tgtttctctatagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcat |
424 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
614593 |
tgttcctctatagttagatcattatagcttaccatacatcttgttattagtatatatacttgttgtaagctctattctaagtaatgagaattcatttcat |
614692 |
T |
|
| Q |
425 |
tccctttcttttg |
437 |
Q |
| |
|
||| |||| |||| |
|
|
| T |
614693 |
tccttttcctttg |
614705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 325 - 437
Target Start/End: Original strand, 620986 - 621098
Alignment:
| Q |
325 |
tgtttctctatagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcat |
424 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
620986 |
tgttcctctatagttagatcattatagcttaccatacatcttgttattagtatatatacttgttgtaagctctattctaagtaatgagaattcatttcat |
621085 |
T |
|
| Q |
425 |
tccctttcttttg |
437 |
Q |
| |
|
||| |||| |||| |
|
|
| T |
621086 |
tccttttcctttg |
621098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 437
Target Start/End: Original strand, 187530 - 187643
Alignment:
| Q |
325 |
tgtttctctatagttagatcattgtagcttaccatactactagttattag--tatatatacttgttgtaagctctattcttagtaatgagaattcatatc |
422 |
Q |
| |
|
|||| |||||||| ||||||||| || ||| ||||| || |||||||| |||||||||| ||||||||||||||||| |||||||| ||||||| || |
|
|
| T |
187530 |
tgttcctctataggtagatcattataacttctcatacatcttgttattagcatatatatact-gttgtaagctctattctaagtaatgataattcatttc |
187628 |
T |
|
| Q |
423 |
attccctttcttttg |
437 |
Q |
| |
|
||||| |||| |||| |
|
|
| T |
187629 |
attccttttcctttg |
187643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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