View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2225-3-Insertion-16 (Length: 446)

Name: NF2225-3-Insertion-16
Description: NF2225-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2225-3-Insertion-16
NF2225-3-Insertion-16
[»] chr4 (42 HSPs)
chr4 (8-416)||(24420086-24420493)
chr4 (8-284)||(24471133-24471402)
chr4 (80-408)||(24475730-24476065)
chr4 (47-298)||(24406228-24406487)
chr4 (322-416)||(24471408-24471502)
chr4 (40-155)||(24406481-24406596)
chr4 (8-174)||(24420423-24420589)
chr4 (8-174)||(24471037-24471203)
chr4 (16-84)||(24476725-24476793)
chr4 (39-174)||(24420807-24420942)
chr4 (16-174)||(24470949-24471107)
chr4 (67-174)||(24421095-24421202)
chr4 (31-170)||(24421339-24421478)
chr4 (16-174)||(24420519-24420677)
chr4 (8-158)||(24470510-24470660)
chr4 (39-170)||(24421243-24421374)
chr4 (31-170)||(24470245-24470384)
chr4 (39-170)||(24470445-24470576)
chr4 (39-164)||(24470781-24470905)
chr4 (44-174)||(24476731-24476855)
chr4 (39-164)||(24470637-24470762)
chr4 (31-160)||(24477630-24477759)
chr4 (40-167)||(24420622-24420749)
chr4 (43-174)||(24420903-24421034)
chr4 (39-170)||(24470349-24470480)
chr4 (40-167)||(24470877-24471004)
chr4 (39-170)||(24477476-24477607)
chr4 (37-108)||(24482187-24482258)
chr4 (43-173)||(24420568-24420698)
chr4 (48-173)||(24421192-24421317)
chr4 (48-173)||(24470598-24470723)
chr4 (48-167)||(24477431-24477550)
chr4 (61-174)||(24470707-24470820)
chr4 (73-158)||(24477074-24477159)
chr4 (40-164)||(24420721-24420845)
chr4 (40-164)||(24420961-24421085)
chr4 (68-108)||(24481447-24481487)
chr4 (28-87)||(24421491-24421550)
chr4 (28-87)||(24470173-24470232)
chr4 (116-174)||(24406558-24406616)
chr4 (16-170)||(24470710-24470864)
chr4 (52-173)||(24470937-24471058)
[»] chr2 (11 HSPs)
chr2 (19-166)||(41900272-41900419)
chr2 (39-149)||(41899953-41900063)
chr2 (58-157)||(41900089-41900188)
chr2 (40-167)||(41900511-41900638)
chr2 (10-174)||(41899832-41899996)
chr2 (13-84)||(41899826-41899897)
chr2 (39-173)||(41899881-41900015)
chr2 (39-118)||(41900368-41900447)
chr2 (16-166)||(41900464-41900614)
chr2 (112-173)||(41900553-41900614)
chr2 (86-174)||(41900360-41900448)
[»] scaffold0879 (6 HSPs)
scaffold0879 (67-174)||(4572-4679)
scaffold0879 (39-164)||(4496-4621)
scaffold0879 (67-170)||(4428-4531)
scaffold0879 (43-167)||(4740-4864)
scaffold0879 (48-173)||(4457-4582)
scaffold0879 (40-164)||(4689-4813)
[»] chr1 (22 HSPs)
chr1 (10-80)||(52821254-52821324)
chr1 (19-170)||(52821356-52821507)
chr1 (112-170)||(11879349-11879407)
chr1 (28-174)||(11904893-11905039)
chr1 (34-83)||(11881946-11881995)
chr1 (34-83)||(11891180-11891229)
chr1 (13-98)||(52821674-52821759)
chr1 (40-155)||(11879442-11879557)
chr1 (136-174)||(11881952-11881990)
chr1 (136-174)||(11891186-11891224)
chr1 (113-167)||(11902063-11902117)
chr1 (13-83)||(11904974-11905044)
chr1 (10-59)||(11879604-11879653)
chr1 (49-98)||(11905058-11905107)
chr1 (19-80)||(52821302-52821363)
chr1 (13-85)||(11879346-11879418)
chr1 (91-167)||(11879445-11879521)
chr1 (31-83)||(11879934-11879986)
chr1 (31-83)||(11880174-11880226)
chr1 (31-83)||(11880270-11880322)
chr1 (31-83)||(11902674-11902726)
chr1 (31-83)||(11902770-11902822)
[»] scaffold1918 (1 HSPs)
scaffold1918 (31-83)||(16-68)


Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 8 - 416
Target Start/End: Complemental strand, 24420493 - 24420086
Alignment:
Q  8 ctccttcaccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctcc 107  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24420493 ctccttcagcttcaccacctcctccatactactacaaatctccacctccaccttctccatcacctcctccaccatatggctataagtcaccgccacctcc 24420394  T
Q  108 ttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctccatatcatccctaccactacaactcacccccgcct 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24420393 ttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctccatatcatccctacctctacaactcacccccgcct 24420294  T
Q  208 cccatctattaagcttccggctattatttgtnnnnnnnntcaatgaattatattcagcattgttgtggttaatttgtattcaagcttttgttaataaaaa 307  Q
    ||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24420293 cccatctattaagcttccggctattatttg-aaaaaatttcaatgaattatattcagcattgttgtggttaatttgtattcaatcttttgttaataaaaa 24420195  T
Q  308 agtctatgctttacagtgaattaagagccttattttgattcaaatgcatctgtgcatgcatggtgttaattcataagtttgtatttatttatctccttta 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24420194 agtctatgctttacagtgaattaagagccttattttgattcaaatgcatctgtgcatgcatggtgttaattcataagtttgtatttatttttctccttta 24420095  T
Q  408 gttgttttt 416  Q
    |||||||||    
T  24420094 gttgttttt 24420086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 24471133 - 24471402
Alignment:
Q  8 ctccttcaccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctcc 107  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24471133 ctccttcagcttcaccacctcctccatactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataggtcaccgccacctcc 24471232  T
Q  108 ttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctccatatcatccctaccactacaactcacccccgcct 207  Q
    |||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  24471233 ttcgccttcaccaccgcctccttatatttacaagt------ctccaccatctccatcacctcctccatatcatccctacctctacagctcacccccgcct 24471326  T
Q  208 cccatctattaagcttccggctattatttgtnnnnnnnntcaatgaattatattcagcattgttgtggttaatttgt 284  Q
    |||||||||||||||||||||||| |||||         ||||||||||||||||||||||||||||||||||||||    
T  24471327 cccatctattaagcttccggctatcatttg-aaattttttcaatgaattatattcagcattgttgtggttaatttgt 24471402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 80 - 408
Target Start/End: Complemental strand, 24476065 - 24475730
Alignment:
Q  80 catatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctccatatca 179  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| |||||||| ||||| |||||||||| ||||||||||| |||    
T  24476065 catatgtctataagtcaccgccacctcctaccccttcaccaccgcctccttgtatttagaagtctcctcctcccccatctccataacctcctccatctca 24475966  T
Q  180 tccctaccactacaactcacccccgcctcccatctattaa-gcttccggcta---ttatttgtnnnnnnnntcaatgaattatattcagcattgttgtgg 275  Q
    | || | | |||||||||||||||||||||| |||||||| |||||||||||   |||||||         |||| |||||||||||||||||||| |||    
T  24475965 ttccgatctctacaactcacccccgcctcccgtctattaaggcttccggctatagttatttg-aaattttttcaaagaattatattcagcattgttctgg 24475867  T
Q  276 ttaatttgtattcaagcttttgttaataaaa-aagtctatgctttacagtgaattaagagcc---ttattttgattcaaatgcatctgtgcatgcatggt 371  Q
    |||||||||||  |||||||||| ||||||| || | ||| |  |||| |||||||||||||   |||||| | ||||| ||||  |||||||| |||||    
T  24475866 ttaatttgtatcgaagcttttgtgaataaaagaattttatacactacaatgaattaagagcctaattatttcggttcaagtgcaattgtgcatgtatggt 24475767  T
Q  372 gttaattcataagtttgtatttatttatctcctttag 408  Q
    ||||||||||||||  ||||||||  |||||||||||    
T  24475766 gttaattcataagtcagtatttatcaatctcctttag 24475730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 47 - 298
Target Start/End: Complemental strand, 24406487 - 24406228
Alignment:
Q  47 ctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctcc 146  Q
    ||||||||||||| ||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||||||| || ||||||||||| |||||| ||||    
T  24406487 ctccacctccaccatctccttcacctcctccaccttatgtctttaagtcaccaccacctccttcgccttcaccgccacctccttatatctacaagactcc 24406388  T
Q  147 acctc------caccatctccatcacctcctccatatcatccctaccactacaactcacccccgcctcccatctattaagcttccggctat---tatttg 237  Q
    |||||      |||||||||| ||||||||||||||||||||||||| ||| |||| |||||| ||||||   |||||||||| ||| |||    | |||    
T  24406387 acctccacctccaccatctccttcacctcctccatatcatccctaccgctataactaacccccacctcccgcgtattaagctttcggatataacaacttg 24406288  T
Q  238 tnnnnnnnntcaatgaattatattcagcattgttgtggttaatttgtattcaagcttttgt 298  Q
             |||||||||||| |||| ||||||||||||||||||||||| ||||||||||    
T  24406287 -aaattttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt 24406228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 322 - 416
Target Start/End: Original strand, 24471408 - 24471502
Alignment:
Q  322 agtgaattaagagccttattttgattcaaatgcatctgtgcatgcatggtgttaattcataagtttgtatttatttatctcctttagttgttttt 416  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24471408 agtgaattaatagccttattttgattcaaatgcatctgtgcatgtatggtgttaattcataagtttgtgtttatttatctcctttagttgttttt 24471502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 24406596 - 24406481
Alignment:
Q  40 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttaca 139  Q
    |||||||||||||| ||||| ||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||||||| || ||||||||||| ||||    
T  24406596 tacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccaccacctccttcgccttcaccgccacctccttatatctaca 24406497  T
Q  140 agtctccacctccacc 155  Q
    || |||||||||||||    
T  24406496 agactccacctccacc 24406481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 24420589 - 24420423
Alignment:
Q  8 ctccttcaccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctcc 107  Q
    ||||||| |||||||| |||||||| ||    ||||||||||| || ||||| ||||| ||||| |||||||| ||||||||||||||||| ||||||||    
T  24420589 ctccttctccttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataagtcacctccacctcc 24420490  T
Q  108 ttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 174  Q
    |||  |||||||||| ||||| ||    ||||| |||||||||||||| ||||||||||||||||||    
T  24420489 ttcagcttcaccacctcctccatactactacaaatctccacctccaccttctccatcacctcctcca 24420423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 24471037 - 24471203
Alignment:
Q  8 ctccttcaccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctcc 107  Q
    ||||||| |||||||| |||||||| ||    ||||||||||| || ||||| ||||| |||||||||||||| |||||| |||||||||| ||||||||    
T  24471037 ctccttctccttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcacctcctccaccctatgtccataagtcacctccacctcc 24471136  T
Q  108 ttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 174  Q
    |||  |||||||||| ||||| ||    ||||| |||||||||||||| ||||||||||||||||||    
T  24471137 ttcagcttcaccacctcctccatactactacaaatctccacctccaccttctccatcacctcctcca 24471203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 24476793 - 24476725
Alignment:
Q  16 ccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatat 84  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24476793 ccttcaccacctcctcctgactactacaaatctccacctccaccttctccatcacctcctccaccatat 24476725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 24420942 - 24420807
Alignment:
Q  39 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 138  Q
    ||||||||||||||| ||||| || || ||||| |||||||||||||| ||||||||||| ||||||||||| ||||| || || ||||| ||| |||||    
T  24420942 ctacaaatctccacccccaccatcaccttcaccccctccaccatatgtatataagtcaccaccacctccttccccttcccctcctcctccatatgtttac 24420843  T
Q  139 aagtctccacctccaccatctccatcacctcctcca 174  Q
    ||||| ||||| |||||||| || || |||||||||    
T  24420842 aagtccccacccccaccatcaccttctcctcctcca 24420807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 24470949 - 24471107
Alignment:
Q  16 ccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgcctt 115  Q
    ||||||||||||||||| ||   |||||| || ||||| ||||| || || ||||| || || ||||| ||||||||||| || || |||||||| ||||    
T  24470949 ccttcaccacctcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatacgtctataagtcccctcctcctccttctcctt 24471048  T
Q  116 caccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 174  Q
    |||| || ||||| ||| ||||||| ||||| || ||||||||||| ||||||||||||    
T  24471049 caccccctcctccatatgtttacaaatctcctcccccaccatctccttcacctcctcca 24471107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 24421202 - 24421095
Alignment:
Q  67 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 166  Q
    ||||||||||| ||||||||||| |||||||| ||||| || || || || ||||| ||||| |||||||||||||| ||||| |||||||| |||||||    
T  24421202 tcacctcctcctccatatgtctacaagtcaccaccaccaccatccccatctccaccacctccatatatttacaagtccccaccaccaccatccccatcac 24421103  T
Q  167 ctcctcca 174  Q
    | ||||||    
T  24421102 cccctcca 24421095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 24421478 - 24421339
Alignment:
Q  31 ccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctcctt 130  Q
    ||||| ||||||||||||||||||||||| ||||| ||||| ||||| || ||||| || ||||| || |||||||| || || || || || ||||| |    
T  24421478 ccttattactacaaatctccacctccaccatctccctcaccacctcctccgtatgtgtacaagtccccaccacctccatctccctctcctcctcctccat 24421379  T
Q  131 atatttacaagtctccacctccaccatctccatcacctcc 170  Q
    || | |||||||| |||||||| |||||||| ||||||||    
T  24421378 atgtctacaagtcaccacctcctccatctccttcacctcc 24421339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 24420677 - 24420519
Alignment:
Q  16 ccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgcctt 115  Q
    ||||||||||| ||||| ||   |||||| || ||||| ||||| || || ||||| || || ||||||||||||||||| || || |||||||| ||||    
T  24420677 ccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccacctccatatgtctataagtcccctcctcctccttctcctt 24420578  T
Q  116 caccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 174  Q
    |||| || ||||| ||| ||||||| ||||| || ||||||||||| ||||| ||||||    
T  24420577 caccccctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctcca 24420519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 24470510 - 24470660
Alignment:
Q  8 ctccttcaccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctcc 107  Q
    ||||||| |||||||| |||||||| ||   |||||| || |||||||| || ||||| |||||||| ||||||||||||||||||   || ||||| ||    
T  24470510 ctccttccccttcacctcctcctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataagagtccaccaccacc 24470609  T
Q  108 ttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatc 158  Q
     || || |||||||| ||||| ||| | ||||||||||| |||||||||||    
T  24470610 ctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatc 24470660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 24421374 - 24421243
Alignment:
Q  39 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 138  Q
    |||||| || |||||||| || ||||| |||||||| ||||||||||||||||||   || ||||| || || || |||||||| ||||| ||| | |||    
T  24421374 ctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctac 24421275  T
Q  139 aagtctccacctccaccatctccatcacctcc 170  Q
    |||||||| ||||||||||| || ||||||||    
T  24421274 aagtctcctcctccaccatcaccctcacctcc 24421243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 24470245 - 24470384
Alignment:
Q  31 ccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctcctt 130  Q
    ||||| ||||||||||||||||||||||| ||||| ||||| ||||| || ||||| || ||||| || |||||||| || || || || || ||||| |    
T  24470245 ccttattactacaaatctccacctccaccatctccctcaccacctcctccgtatgtgtacaagtccccaccacctccatctccctctcctcctcctccat 24470344  T
Q  131 atatttacaagtctccacctccaccatctccatcacctcc 170  Q
    || | |||||||| |||||||| ||||| || ||||||||    
T  24470345 atgtctacaagtcaccacctcctccatcaccttcacctcc 24470384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 170
Target Start/End: Original strand, 24470445 - 24470576
Alignment:
Q  39 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 138  Q
    |||||| ||||| ||||||||  | || |||||||| || || ||||| || |||||||| ||||||||||| |||||||| || ||||| ||| | |||    
T  24470445 ctacaagtctcctcctccaccaacaccctcacctcccccgccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatatgtctac 24470544  T
Q  139 aagtctccacctccaccatctccatcacctcc 170  Q
    ||||| |||||||| |||||||| ||||||||    
T  24470545 aagtcaccacctcctccatctccttcacctcc 24470576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 164
Target Start/End: Original strand, 24470781 - 24470905
Alignment:
Q  39 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 138  Q
    ||||||||||||||| ||||| || || ||||| |||||||||||||| ||||||||||| || ||||| || || || || || || || ||| |||||    
T  24470781 ctacaaatctccacccccaccatcaccttcaccccctccaccatatgtatataagtcaccacctcctccatctccctctcctcc-ccaccatatgtttac 24470879  T
Q  139 aagtctccacctccaccatctccatc 164  Q
    ||||| ||||||||||| ||||||||    
T  24470880 aagtcaccacctccaccgtctccatc 24470905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 44 - 174
Target Start/End: Complemental strand, 24476855 - 24476731
Alignment:
Q  44 aatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtc 143  Q
    |||||||||| ||||| ||||| |||||||| ||| | ||||||||||||||||  |||||||      |||||||||| |||||| |    ||||| ||    
T  24476855 aatctccacccccaccatctccttcacctcccccatcctatgtctataagtcacatccacctc------cttcaccacctcctcctgactactacaaatc 24476762  T
Q  144 tccacctccaccatctccatcacctcctcca 174  Q
    |||||||||||| ||||||||||||||||||    
T  24476761 tccacctccaccttctccatcacctcctcca 24476731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 164
Target Start/End: Original strand, 24470637 - 24470762
Alignment:
Q  39 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 138  Q
    |||||| ||||| |||||||| || || || ||||| ||||| ||| | |||||||| || |||||||| || |||||||| || ||||| ||| | |||    
T  24470637 ctacaagtctcctcctccaccatcaccttctcctcccccaccctatatttataagtcgccaccacctccatctccttcacctcctcctccatatgtctac 24470736  T
Q  139 aagtctccacctccaccatctccatc 164  Q
    ||||| |||||||||||||| |||||    
T  24470737 aagtcaccacctccaccatccccatc 24470762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 160
Target Start/End: Complemental strand, 24477759 - 24477630
Alignment:
Q  31 ccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctcctt 130  Q
    ||||| ||||||| || |||||||||||  || |||||||| || ||||| |||||||||||||| || ||||| || || || |||||||| ||||| |    
T  24477759 ccttattactacatatatccacctccacgatccccatcaccaccaccaccttatgtctataagtctcctccaccaccatctccctcaccacctcctccat 24477660  T
Q  131 atatttacaagtctccacctccaccatctc 160  Q
    || | |||||||| ||||| || |||||||    
T  24477659 atgtgtacaagtccccaccacctccatctc 24477630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 167
Target Start/End: Complemental strand, 24420749 - 24420622
Alignment:
Q  40 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttaca 139  Q
    ||||| || ||||||||||| |||||||| || || || ||||| || ||||| || || || || || || ||||||||||||||||| ||||| ||||    
T  24420749 tacaagtcaccacctccaccgtctccatccccaccacctccatacgtttataaatctcctcctccaccatctccttcaccaccgcctccatatatctaca 24420650  T
Q  140 agtctccacctccaccatctccatcacc 167  Q
    |||| ||||| |||||||| || |||||    
T  24420649 agtcaccaccaccaccatccccttcacc 24420622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 24421034 - 24420903
Alignment:
Q  43 aaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagt 142  Q
    ||||| ||||| || || |||||||| || ||||||||||||||||| |||||||| || || || || || || ||||| ||||| ||| | ||||| |    
T  24421034 aaatcaccaccacccccatctccatccccccctccaccatatgtctacaagtcaccacctccaccatccccatctccaccacctccatatgtctacaaat 24420935  T
Q  143 ctccacctccaccatctccatcacctcctcca 174  Q
    ||||||| |||||||| || ||||| ||||||    
T  24420934 ctccacccccaccatcaccttcaccccctcca 24420903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 170
Target Start/End: Original strand, 24470349 - 24470480
Alignment:
Q  39 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 138  Q
    |||||| || |||||||| || || || |||||||| ||||||||||||||||||   || ||||| || || || |||||||| ||||| ||| | |||    
T  24470349 ctacaagtcaccacctcctccatcaccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctac 24470448  T
Q  139 aagtctccacctccaccatctccatcacctcc 170  Q
    |||||||| ||||||||| | || ||||||||    
T  24470449 aagtctcctcctccaccaacaccctcacctcc 24470480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 24470877 - 24471004
Alignment:
Q  40 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttaca 139  Q
    ||||| || ||||||||||| |||||||| || || || ||||| || ||||||||||| || ||  | || ||||||||||| ||||| ||||| ||||    
T  24470877 tacaagtcaccacctccaccgtctccatccccaccacctccatacgtttataagtcacctcctccagcatctccttcaccacctcctccatatatctaca 24470976  T
Q  140 agtctccacctccaccatctccatcacc 167  Q
    |||| ||||| |||||||| || |||||    
T  24470977 agtcaccaccaccaccatccccttcacc 24471004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 24477607 - 24477476
Alignment:
Q  39 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 138  Q
    ||||||||| |||||||| || ||||| |  ||||| ||||||||||||||||||   || ||||| || || || ||||| || ||||| ||| | |||    
T  24477607 ctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctac 24477508  T
Q  139 aagtctccacctccaccatctccatcacctcc 170  Q
    ||||| |||||||| |||||||| ||||||||    
T  24477507 aagtcaccacctcctccatctccttcacctcc 24477476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 24482258 - 24482187
Alignment:
Q  37 tactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctcct 108  Q
    ||||||||||||||||| ||||| ||||||||||| || || || ||||||||||| ||||| |||||||||    
T  24482258 tactacaaatctccaccaccaccatctccatcaccaccacctccttatgtctataaatcaccaccacctcct 24482187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 43 - 173
Target Start/End: Complemental strand, 24420698 - 24420568
Alignment:
Q  43 aaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagt 142  Q
    |||||||| |||||||| ||||| ||||| || || |||||| |||| |||||||| ||||| || || ||||||||||| ||||| ||| | || ||||    
T  24420698 aaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccacctccatatgtctataagt 24420599  T
Q  143 ctccacctccaccatctccatcacctcctcc 173  Q
    | || ||||| || ||||| ||||| |||||    
T  24420598 cccctcctcctccttctccttcaccccctcc 24420568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 173
Target Start/End: Complemental strand, 24421317 - 24421192
Alignment:
Q  48 tccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctcca 147  Q
    |||||| ||||| ||||||||||| || || ||||||||||| ||||| || || || || || || ||||| || || |||||| |||||||||| |||    
T  24421317 tccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcacctcccccaccttatgtttacaagtcacca 24421218  T
Q  148 cctccaccatctccatcacctcctcc 173  Q
    || || ||||| || |||||||||||    
T  24421217 ccacctccatccccttcacctcctcc 24421192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 24470598 - 24470723
Alignment:
Q  48 tccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctcca 147  Q
    |||||| ||||| ||||||||||| || || ||||||||||| ||||| || || || || || ||||| || || || || |||||||| ||||| |||    
T  24470598 tccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccttctcctcccccaccctatatttataagtcgcca 24470697  T
Q  148 cctccaccatctccatcacctcctcc 173  Q
    || || |||||||| |||||||||||    
T  24470698 ccacctccatctccttcacctcctcc 24470723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 167
Target Start/End: Complemental strand, 24477550 - 24477431
Alignment:
Q  48 tccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctcca 147  Q
    |||||| ||||| ||||| |||||||| || ||||||||||| |||||||| || ||||| || |||||||| || || || ||| | ||||||  |||     
T  24477550 tccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctacaagagtcct 24477451  T
Q  148 cctccaccatctccatcacc 167  Q
    |||| ||| |||||||||||    
T  24477450 cctctaccttctccatcacc 24477431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 24470707 - 24470820
Alignment:
Q  61 tctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctc 160  Q
    ||||| ||||||||||| ||||||||||| |||||||| || || || || || || ||||| || || ||| | ||||| |||||||| |||||||| |    
T  24470707 tctccttcacctcctcctccatatgtctacaagtcaccacctccaccatccccatctccaccaccaccatatgtctacaaatctccacccccaccatcac 24470806  T
Q  161 catcacctcctcca 174  Q
    | ||||| ||||||    
T  24470807 cttcaccccctcca 24470820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 24477159 - 24477074
Alignment:
Q  73 cctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatc 158  Q
    ||||| ||||||||||||||| |||| || ||||| || || || ||||| ||||| ||| ||||||| |||||||| ||||||||    
T  24477159 cctcctccatatgtctataaggcaccacctcctccatctccatccccaccacctccatatgtttacaaatctccacccccaccatc 24477074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 24420845 - 24420721
Alignment:
Q  40 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttaca 139  Q
    ||||| || ||||| ||||| || || || ||||||||||| ||| | |||||||| || |||||||| || || || || || || || ||| ||||||    
T  24420845 tacaagtccccacccccaccatcaccttctcctcctccaccctatatttataagtcgccaccacctccatctccctctcctcccccaccatatgtttaca 24420746  T
Q  140 agtctccacctccaccatctccatc 164  Q
    |||| ||||||||||| ||||||||    
T  24420745 agtcaccacctccaccgtctccatc 24420721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 24421085 - 24420961
Alignment:
Q  40 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttaca 139  Q
    ||||| ||||| |||||||| || || || ||||| ||||||||||| ||||| ||||| ||||| || || || || || || || || ||| | ||||    
T  24421085 tacaagtctcctcctccaccatcaccctcccctcccccaccatatgtatataaatcaccaccacccccatctccatccccccctccaccatatgtctaca 24420986  T
Q  140 agtctccacctccaccatctccatc 164  Q
    |||| |||||||||||||| |||||    
T  24420985 agtcaccacctccaccatccccatc 24420961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 24481487 - 24481447
Alignment:
Q  68 cacctcctccaccatatgtctataagtcaccgccacctcct 108  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  24481487 cacctccaccaccatatgtctacaagtcaccgccacctcct 24481447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 24421550 - 24421491
Alignment:
Q  28 cctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtc 87  Q
    ||||| || ||||||||||| |||||||||||||||||||| || || || |||||||||    
T  24421550 cctccatattactacaaatccccacctccaccttctccatcgccaccacctccatatgtc 24421491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 24470173 - 24470232
Alignment:
Q  28 cctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtc 87  Q
    ||||| || ||||||||||| |||||||||||||||||||| || || || |||||||||    
T  24470173 cctccatattactacaaatccccacctccaccttctccatcgccaccacctccatatgtc 24470232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 24406616 - 24406558
Alignment:
Q  116 caccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 174  Q
    ||||||| || || ||| ||||||| |||||||| ||||||||||| ||||||||||||    
T  24406616 caccaccaccaccgtatgtttacaaatctccacccccaccatctccttcacctcctcca 24406558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 24470710 - 24470864
Alignment:
Q  16 ccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgcctt 115  Q
    |||||||| |||||||| ||   |||||| || ||||||||||| || ||||| || || |||||||||||||| || || || || || || || ||||    
T  24470710 ccttcacctcctcctccatatgtctacaagtcaccacctccaccatccccatctccaccaccaccatatgtctacaaatctccacccccaccatcacctt 24470809  T
Q  116 caccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcc 170  Q
    |||| || || || ||| | || ||||| |||||||| |||||||| || |||||    
T  24470810 caccccctccaccatatgtatataagtcaccacctcctccatctccctctcctcc 24470864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 24470937 - 24471058
Alignment:
Q  52 cctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctc 151  Q
    |||||| | ||||| ||||| ||||| |||||| |||| |||||||| ||||| || || ||||||||||| ||||| ||  | || ||||| || ||||    
T  24470937 cctccagcatctccttcaccacctcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatacgtctataagtcccctcctc 24471036  T
Q  152 caccatctccatcacctcctcc 173  Q
    | || ||||| ||||| |||||    
T  24471037 ctccttctccttcaccccctcc 24471058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 41900419 - 41900272
Alignment:
Q  19 tcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcac 118  Q
    ||||||||||| |||||    ||||| || ||||| || |||||||| |||| |||||||||||||||||| || || || |||||||| || |||||||    
T  41900419 tcaccacctccaccttatatttacaagtcaccaccacctccttctccttcacttcctccaccatatgtctacaaatctcctccacctccctctccttcac 41900320  T
Q  119 caccgcctccttatatttacaagtctccacctccaccatctccatcac 166  Q
    |||| ||||| ||| | ||||||||||| |||||||||||| ||||||    
T  41900319 caccacctccatatgtctacaagtctcctcctccaccatctgcatcac 41900272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 39 - 149
Target Start/End: Complemental strand, 41900063 - 41899953
Alignment:
Q  39 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 138  Q
    |||||| ||||||||||| || ||||| |||||||| |||||||||||||| ||||| || ||||| ||||| || |||||||| ||||| ||| |||||    
T  41900063 ctacaactctccacctcctccctctccttcacctccaccaccatatgtctacaagtccccaccaccaccttccccctcaccacctcctccatatgtttac 41899964  T
Q  139 aagtctccacc 149  Q
    ||||| |||||    
T  41899963 aagtccccacc 41899953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 157
Target Start/End: Complemental strand, 41900188 - 41900089
Alignment:
Q  58 ccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccat 157  Q
    |||||||| |||||||||||||| |||||||| || || || |||||||| || ||||||||||||||||| ||| ||||||| ||||| || |||||||    
T  41900188 ccttctccctcacctcctccaccgtatgtctacaaatctcctccacctccctctccttcaccaccgcctccatatgtttacaaatctcctccaccaccat 41900089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 167
Target Start/End: Complemental strand, 41900638 - 41900511
Alignment:
Q  40 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttaca 139  Q
    |||||||||||||| ||||| ||||| ||||| |||||||| ||| | ||||||||||| |||||||| || |||||||| || || || ||| | ||||    
T  41900638 tacaaatctccaccaccaccatctccttcaccacctccaccttatatttataagtcaccaccacctccctctccttcacctcctccgccatatgtctaca 41900539  T
Q  140 agtctccacctccaccatctccatcacc 167  Q
    | ||||| || || || |||||||||||    
T  41900538 aatctcctccacctccctctccatcacc 41900511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 174
Target Start/End: Complemental strand, 41899996 - 41899832
Alignment:
Q  10 ccttcaccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctcctt 109  Q
    ||||| || |||||||||||||| ||    ||||| || ||||| || ||||| || ||||| ||||| |||||||  || ||||| || || || || |    
T  41899996 ccttccccctcaccacctcctccatatgtttacaagtccccaccaccgccttccccgtcaccccctcctccatatgcgtacaagtctcctcccccaccat 41899897  T
Q  110 cgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 174  Q
    | |||||||| || ||||| ||| |||||||||||||||||||||| ||| | ||||||||||||    
T  41899896 caccttcaccgcctcctccatatgtttacaagtctccacctccaccttcttcttcacctcctcca 41899832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 41899897 - 41899826
Alignment:
Q  13 tcaccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatat 84  Q
    ||||||||||| |||||||| ||    ||||| |||||||||||||||||| | ||||||||||||||||||    
T  41899897 tcaccttcaccgcctcctccatatgtttacaagtctccacctccaccttcttcttcacctcctccaccatat 41899826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 173
Target Start/End: Complemental strand, 41900015 - 41899881
Alignment:
Q  39 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 138  Q
    |||||| || ||||| |||||||| || ||||| ||||| |||||||| || ||||| || ||||| ||||| || ||||| || ||||| |||   |||    
T  41900015 ctacaagtccccaccaccaccttccccctcaccacctcctccatatgtttacaagtccccaccaccgccttccccgtcaccccctcctccatatgcgtac 41899916  T
Q  139 aagtctccacctccaccatctccatcacctcctcc 173  Q
    |||||||| || |||||||| || ||||| |||||    
T  41899915 aagtctcctcccccaccatcaccttcaccgcctcc 41899881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 41900447 - 41900368
Alignment:
Q  39 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcac 118  Q
    |||||| || ||||| ||||| || |||||||| |||||||| ||| | || |||||||| ||||||||||| |||||||    
T  41900447 ctacaagtccccaccaccaccatccccatcaccacctccaccttatatttacaagtcaccaccacctccttctccttcac 41900368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 41900614 - 41900464
Alignment:
Q  16 ccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgcctt 115  Q
    |||||||||||||| |||||    || || || ||||| || || ||||| ||||||||||| ||||||||||| || || || |||||||| || || |    
T  41900614 ccttcaccacctccaccttatatttataagtcaccaccacctccctctccttcacctcctccgccatatgtctacaaatctcctccacctccctctccat 41900515  T
Q  116 caccaccgcctccttatatttacaagtctccacctccaccatctccatcac 166  Q
    ||||||  |||   ||| | || |||||||| |||||||||||| ||||||    
T  41900514 caccacaacctaagtatgtctataagtctcctcctccaccatctgcatcac 41900464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 41900614 - 41900553
Alignment:
Q  112 ccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcc 173  Q
    ||||||||||| || ||||||||||| ||||| ||||| || || ||||| |||||||||||    
T  41900614 ccttcaccacctccaccttatatttataagtcaccaccacctccctctccttcacctcctcc 41900553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 41900448 - 41900360
Alignment:
Q  86 tctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 174  Q
    |||| ||||| || ||||| || || || |||||||| || ||||||||||||||||| ||||| || || ||||| |||| |||||||    
T  41900448 tctacaagtccccaccaccaccatccccatcaccacctccaccttatatttacaagtcaccaccacctccttctccttcacttcctcca 41900360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 4572 - 4679
Alignment:
Q  67 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 166  Q
    ||||||||||| ||||||||||| |||||||| ||||| || || || || ||||| ||||| |||||||||||||| ||||| |||||||| |||||||    
T  4572 tcacctcctcctccatatgtctacaagtcaccaccaccaccatccccatctccaccacctccatatatttacaagtccccaccaccaccatccccatcac 4671  T
Q  167 ctcctcca 174  Q
    | ||||||    
T  4672 cccctcca 4679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 164
Target Start/End: Original strand, 4496 - 4621
Alignment:
Q  39 ctacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttac 138  Q
    |||||| ||||| |||||||| || || |||||||| ||||||||||| || |||||||| |||||||| || |||||||| || ||||| ||| | |||    
T  4496 ctacaagtctcctcctccaccatcaccctcacctcccccaccatatgtttacaagtcaccaccacctccatccccttcacctcctcctccatatgtctac 4595  T
Q  139 aagtctccacctccaccatctccatc 164  Q
    ||||| ||||| |||||||| |||||    
T  4596 aagtcaccaccaccaccatccccatc 4621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 170
Target Start/End: Original strand, 4428 - 4531
Alignment:
Q  67 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 166  Q
    |||||||| ||||||||||||||||||   || ||||| || || || |||||||| ||||| ||| | ||||||||||| ||||||||||| || ||||    
T  4428 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcac 4527  T
Q  167 ctcc 170  Q
    ||||    
T  4528 ctcc 4531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 4740 - 4864
Alignment:
Q  43 aaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagt 142  Q
    ||||| ||||| || || |||||||| || ||||||||||||||||| |||||||| || || || || || || ||||| ||||| ||| | ||||| |    
T  4740 aaatcaccaccacccccatctccatccccccctccaccatatgtctacaagtcaccacctccaccatccccatctccaccacctccatatgtctacaaat 4839  T
Q  143 ctccacctccaccatctccatcacc 167  Q
    ||||||| |||||||| || |||||    
T  4840 ctccacccccaccatcaccttcacc 4864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 4457 - 4582
Alignment:
Q  48 tccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctcca 147  Q
    |||||| ||||| ||||||||||| || || ||||||||||| ||||| || || || || || || ||||| || || || ||| |||||||||| |||    
T  4457 tccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcacctcccccaccatatgtttacaagtcacca 4556  T
Q  148 cctccaccatctccatcacctcctcc 173  Q
    || || ||||| || |||||||||||    
T  4557 ccacctccatccccttcacctcctcc 4582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 164
Target Start/End: Original strand, 4689 - 4813
Alignment:
Q  40 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttaca 139  Q
    ||||| ||||| |||||||| || || || ||||| ||||||||||| ||||| ||||| ||||| || || || || || || || || ||| | ||||    
T  4689 tacaagtctcctcctccaccatcaccctcccctcccccaccatatgtatataaatcaccaccacccccatctccatccccccctccaccatatgtctaca 4788  T
Q  140 agtctccacctccaccatctccatc 164  Q
    |||| |||||||||||||| |||||    
T  4789 agtcaccacctccaccatccccatc 4813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 52821324 - 52821254
Alignment:
Q  10 ccttcaccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccacc 80  Q
    |||||||||||||| ||||| ||||||||||| |||||||| |||||||| ||||| || |||||||||||    
T  52821324 ccttcaccttcacctcctccaccttactactataaatctcctcctccaccctctccctcccctcctccacc 52821254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 52821507 - 52821356
Alignment:
Q  19 tcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcac 118  Q
    ||||| || |||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||| ||   ||| ||||| || ||||| || || || ||||    
T  52821507 tcacccccacctccttactactataaatctccaccaccaccctctccctcacctccaccaccttactactacaagtccccaccaccaccctctccctcac 52821408  T
Q  119 caccgcctccttatatttacaagtctccacctccaccatctccatcacctcc 170  Q
    | || ||||||||    |||||||| || || ||||| ||||| ||||||||    
T  52821407 ctccacctccttactactacaagtcacctccaccaccctctccctcacctcc 52821356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 11879349 - 11879407
Alignment:
Q  112 ccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcc 170  Q
    ||||||||||| ||||||||| ||||||| || |||||||| ||||| |||||||||||    
T  11879349 ccttcaccaccacctccttatgtttacaaatcgccacctcctccatccccatcacctcc 11879407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 11904893 - 11905039
Alignment:
Q  28 cctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctc 127  Q
    ||||| |||||||| || || ||||| ||||| || ||||||||||||||||||||    || ||||| || || || || || || || ||||| || |    
T  11904893 cctccatactactataagtcaccacccccaccatccccatcacctcctccaccatactattacaagtccccccctccaccatcaccatctccaccaccac 11904992  T
Q  128 cttatatttacaagtctccacctccaccatctccatcacctcctcca 174  Q
    | ||   ||||||||| |||||||||||||||||||| |||||||||    
T  11904993 catactattacaagtcaccacctccaccatctccatctcctcctcca 11905039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 11881946 - 11881995
Alignment:
Q  34 tactactacaaatctccacctccaccttctccatcacctcctccaccata 83  Q
    ||||||||||| || ||||| ||||| |||||||||||||||||||||||    
T  11881946 tactactacaagtcaccacccccaccatctccatcacctcctccaccata 11881995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 11891180 - 11891229
Alignment:
Q  34 tactactacaaatctccacctccaccttctccatcacctcctccaccata 83  Q
    ||||||||||| || ||||| ||||| |||||||||||||||||||||||    
T  11891180 tactactacaagtcaccacccccaccatctccatcacctcctccaccata 11891229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 52821759 - 52821674
Alignment:
Q  13 tcaccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcacc 98  Q
    |||||||||||||| || |||||| | ||||| |||||||||||||||||  |||| ||||| || || ||||| || ||||||||    
T  52821759 tcaccttcaccaccaccgccttacgagtacaagtctccacctccaccttcctcatcccctccacctccttatgtatacaagtcacc 52821674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 155
Target Start/End: Original strand, 11879442 - 11879557
Alignment:
Q  40 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttaca 139  Q
    ||||| || ||||| |||||  |||| ||||| || || || ||||| || |||||||| ||||| || || ||||||||||| ||||||||| | ||||    
T  11879442 tacaagtcaccaccaccaccaactccttcaccaccacctccttatgtgtacaagtcaccaccaccgccatctccttcaccaccacctccttatgtgtaca 11879541  T
Q  140 agtctccacctccacc 155  Q
    |||| ||||| |||||    
T  11879542 agtcaccaccaccacc 11879557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 11881952 - 11881990
Alignment:
Q  136 tacaagtctccacctccaccatctccatcacctcctcca 174  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  11881952 tacaagtcaccacccccaccatctccatcacctcctcca 11881990  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 11891186 - 11891224
Alignment:
Q  136 tacaagtctccacctccaccatctccatcacctcctcca 174  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  11891186 tacaagtcaccacccccaccatctccatcacctcctcca 11891224  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 11902063 - 11902117
Alignment:
Q  113 cttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacc 167  Q
    |||||||||| ||||||||| | |||||||| ||||| ||||||||||| |||||    
T  11902063 cttcaccaccacctccttatgtatacaagtcaccaccaccaccatctccttcacc 11902117  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 11904974 - 11905044
Alignment:
Q  13 tcaccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccata 83  Q
    ||||| || ||||| || || ||||| ||||| || ||||||||||| |||||||| ||||||||||||||    
T  11904974 tcaccatctccaccaccaccatactattacaagtcaccacctccaccatctccatctcctcctccaccata 11905044  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 11879604 - 11879653
Alignment:
Q  10 ccttcaccttcaccacctcctccttactactacaaatctccacctccacc 59  Q
    ||||| |||||||| || ||||||||||||||||||||||| || |||||    
T  11879604 ccttctccttcacctccacctccttactactacaaatctcctccaccacc 11879653  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 11905058 - 11905107
Alignment:
Q  49 ccacctccaccttctccatcacctcctccaccatatgtctataagtcacc 98  Q
    ||||||||||| || ||||| |||||||||||||||  ||||||||||||    
T  11905058 ccacctccaccatccccatcccctcctccaccatattactataagtcacc 11905107  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 52821363 - 52821302
Alignment:
Q  19 tcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccacc 80  Q
    ||||| || ||||||||||||||||| || || || |||||||| || ||||||||||||||    
T  52821363 tcacctccacctccttactactacaagtcacctccaccaccttcaccttcacctcctccacc 52821302  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 11879346 - 11879418
Alignment:
Q  13 tcaccttcaccacctcctccttactactacaaatctccacctccaccttctccatcacctcctccaccatatg 85  Q
    |||||||||||||| ||||||||    |||||||| |||||||| || || ||||||||||| ||||| ||||    
T  11879346 tcaccttcaccaccacctccttatgtttacaaatcgccacctcctccatccccatcacctccaccaccttatg 11879418  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 11879445 - 11879521
Alignment:
Q  91 aagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacc 167  Q
    |||||||| ||||| ||  | ||||||||||| ||||||||| | |||||||| ||||| || |||||||| |||||    
T  11879445 aagtcaccaccaccaccaactccttcaccaccacctccttatgtgtacaagtcaccaccaccgccatctccttcacc 11879521  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 11879934 - 11879986
Alignment:
Q  31 ccttactactacaaatctccacctccaccttctccatcacctcctccaccata 83  Q
    |||||||||||||||||||| || || ||||| ||||| ||||| ||||||||    
T  11879934 ccttactactacaaatctcccccacccccttcaccatctcctccaccaccata 11879986  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 11880174 - 11880226
Alignment:
Q  31 ccttactactacaaatctccacctccaccttctccatcacctcctccaccata 83  Q
    |||||||| ||||||||||| || |||||||| ||||| ||||| ||||||||    
T  11880174 ccttactattacaaatctcccccaccaccttcaccatctcctccaccaccata 11880226  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 11880270 - 11880322
Alignment:
Q  31 ccttactactacaaatctccacctccaccttctccatcacctcctccaccata 83  Q
    |||||||| ||||||||||| || |||||||| ||||| ||||| ||||||||    
T  11880270 ccttactattacaaatctcccccaccaccttcaccatctcctccaccaccata 11880322  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 11902674 - 11902726
Alignment:
Q  31 ccttactactacaaatctccacctccaccttctccatcacctcctccaccata 83  Q
    |||||||| ||||||||||| || |||||||| ||||| ||||| ||||||||    
T  11902674 ccttactattacaaatctcccccaccaccttcaccatctcctccaccaccata 11902726  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 11902770 - 11902822
Alignment:
Q  31 ccttactactacaaatctccacctccaccttctccatcacctcctccaccata 83  Q
    |||||||| ||||||||||| || |||||||| ||||| ||||| ||||||||    
T  11902770 ccttactattacaaatctcccccaccaccttcaccatctcctccaccaccata 11902822  T

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Target: scaffold1918 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1918
Description:

Target: scaffold1918; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 68 - 16
Alignment:
Q  31 ccttactactacaaatctccacctccaccttctccatcacctcctccaccata 83  Q
    |||||||| |||||||||||||| ||||| ||||| |||||||| || |||||    
T  68 ccttactattacaaatctccaccaccaccatctccctcacctccacctccata 16  T

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