View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2225-3-Insertion-2 (Length: 996)

Name: NF2225-3-Insertion-2
Description: NF2225-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2225-3-Insertion-2
NF2225-3-Insertion-2
[»] chr7 (23 HSPs)
chr7 (502-992)||(38287584-38288073)
chr7 (8-506)||(38288192-38288703)
chr7 (383-467)||(35096447-35096531)
chr7 (383-472)||(42800917-42801006)
chr7 (383-467)||(35070411-35070495)
chr7 (383-467)||(35079109-35079193)
chr7 (383-467)||(35093199-35093283)
chr7 (387-472)||(43029904-43029989)
chr7 (382-438)||(36741460-36741516)
chr7 (397-470)||(38155333-38155406)
chr7 (779-837)||(31450667-31450725)
chr7 (383-469)||(33864557-33864643)
chr7 (387-448)||(42835610-42835671)
chr7 (508-603)||(38283997-38284093)
chr7 (671-744)||(33864167-33864237)
chr7 (383-438)||(34151011-34151066)
chr7 (383-438)||(34176058-34176113)
chr7 (679-742)||(44958373-44958436)
chr7 (391-470)||(45582150-45582229)
chr7 (408-470)||(44958707-44958769)
chr7 (795-840)||(21179916-21179961)
chr7 (791-836)||(35159941-35159986)
chr7 (791-836)||(40041455-40041500)
[»] chr5 (3 HSPs)
chr5 (383-467)||(9666635-9666719)
chr5 (770-836)||(30284601-30284667)
chr5 (791-836)||(7629138-7629183)
[»] chr6 (6 HSPs)
chr6 (383-469)||(25570614-25570700)
chr6 (383-469)||(26005082-26005168)
chr6 (377-450)||(4161451-4161524)
chr6 (671-744)||(25570205-25570278)
chr6 (377-450)||(4223071-4223144)
chr6 (383-429)||(26123895-26123941)
[»] chr3 (4 HSPs)
chr3 (873-925)||(1553836-1553888)
chr3 (770-836)||(28968568-28968634)
chr3 (770-831)||(25700818-25700879)
chr3 (791-836)||(30787556-30787601)
[»] chr1 (3 HSPs)
chr1 (379-450)||(52214733-52214804)
chr1 (791-836)||(2222973-2223018)
chr1 (791-840)||(34432373-34432422)
[»] chr8 (2 HSPs)
chr8 (770-830)||(17702553-17702613)
chr8 (770-844)||(32877495-32877572)
[»] scaffold0176 (1 HSPs)
scaffold0176 (388-438)||(20474-20524)
[»] chr4 (1 HSPs)
chr4 (770-836)||(17892306-17892372)


Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 502 - 992
Target Start/End: Complemental strand, 38288073 - 38287584
Alignment:
Q  502 tgtatctcaaatcattgtgaaaaaatcctacatattctattttttcctctcaaagttaaccatatgtggattttctggatgtggatttctgatctgaaaa 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  38288073 tgtatctcaaatcattgtgaaaaaatcctacatattctattttttcctctcaaagtcaaccatatgtggattttccggatgtggatttctgatctgaaaa 38287974  T
Q  602 ttaattatcataatattgcatatatggaattgtaaaattccaccaagcataaaagaaatgcaggacttctattttaattgaaataagatgttgtttatta 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38287973 ttaattatcataatattgcatatatggaattgtaaaattccaccaagcataaaagaaatgcaggacttctattttaattgaaataagatgttgtttatta 38287874  T
Q  702 tgattaaggccatgtttgacaaggtcaaactgctagcttataacaaatatgcatcctgcaccaatacaatacctgcccgatacgccccaatacgtatcgg 801  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38287873 tgattaaggccatgtttgacaaggtcaaactgctagcttataacaaatatgcatcctgcaccaatacaatacctgcccgatacgccccaatacgtatcgg 38287774  T
Q  802 gagggtatctggagattaaattttattttaaaaaataattttctcatgcttttcagataggatacgcgagagatagacggtggaaaattgatacatgcgg 901  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||    
T  38287773 gagggtatctggagattaaattttattttaaaaaataattgtctcatgctttttagataggatacgcgagggatagacggtggaaaattgatacgtgcgg 38287674  T
Q  902 atgcacaatgtttctattattttttgggaataatatgtaatgaactgagtaattgtgtttactttttgcg-ctattg-tttgcttttgagttt 992  Q
    ||||||||||||||||||||||||   |||  |||||||||  ||| ||||||||||||||||||||| | |||||| |||||||||||||||    
T  38287673 atgcacaatgtttctattattttt---gaaatatatgtaattgactaagtaattgtgtttactttttgtgcctattgttttgcttttgagttt 38287584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 8 - 506
Target Start/End: Complemental strand, 38288703 - 38288192
Alignment:
Q  8 aaatgagcataaaaaagttgcacattttctgcggactcaaaaa--tggcnnnnnnnncaggtccttaattgagtgcaccgtagcagccatggtatcaaca 105  Q
    ||||||||||||||||||||||||||||||||||| |||||||  ||||        ||||||||||||||||| |||||||||||||||||||||||||    
T  38288703 aaatgagcataaaaaagttgcacattttctgcggagtcaaaaaaatggcaaaaaaaacaggtccttaattgagtacaccgtagcagccatggtatcaaca 38288604  T
Q  106 tcattcagcaatctcaccttattccaaacagccctattgtaatgacattccaccagaaaataccaatctgtcaattacatgaaattactaaccattcaaa 205  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38288603 tcattcagcaatctcacattattccaaacagccctattgtaatgacattccaccagaaaataccaatctgtcaattacatgaaattactaaccattcaaa 38288504  T
Q  206 aaattctccaaataaatcttattgcctgacttagcagtatactttccactagaatcccaatcccacataatttgatcacagatgaaatattgatggaggg 305  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38288503 aaattctccaaataaatcttatagcctgacttagcagtatactttccactagaatcccaatcccacataatttgatcacagatgaaatattgatggaggg 38288404  T
Q  306 gcatttggacattttttatcggccacatcagaagaaaacaatttgctaatgaagtttacactatc------------ttcattataaataaataacacta 393  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||    
T  38288403 gcatttggacat-ttttatcggccacatcagaagaaaacaatttgctaatgaagtttacactatcttcattgtaatattcattataaataaataacacta 38288305  T
Q  394 cagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaataagattctgttcaaaccaacaaccattggagctcttactccacctt 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38288304 cagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaataagattctgttcaaaccaacaaccattggagctcttactccacctt 38288205  T
Q  494 ccagcacttgtat 506  Q
    |||||||||||||    
T  38288204 ccagcacttgtat 38288192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 383 - 467
Target Start/End: Original strand, 35096447 - 35096531
Alignment:
Q  383 aaataacactacagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaataagattctgttcaaaccaac 467  Q
    ||||||||||||| ||||||||  || || |||||||||||||||||||||||||| || ||||||| ||||| |||||||||||    
T  35096447 aaataacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctcttcaaaccaac 35096531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 383 - 472
Target Start/End: Complemental strand, 42801006 - 42800917
Alignment:
Q  383 aaataacactacagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaataagattctgttcaaaccaacaacca 472  Q
    |||||||| |||| ||||||||  || || |||||||||||||||||||||||||| || ||||||| ||||| ||||| ||||||||||    
T  42801006 aaataacattacaaaattataaggtggcattgttcatttacttcatctttaagcatctcgtgaataacattctcttcaatccaacaacca 42800917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 383 - 467
Target Start/End: Original strand, 35070411 - 35070495
Alignment:
Q  383 aaataacactacagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaataagattctgttcaaaccaac 467  Q
    ||||||||||||| ||||||||  || || |||||||||||||||||||||||||| || ||||||| ||||| | |||||||||    
T  35070411 aaataacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaac 35070495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 383 - 467
Target Start/End: Original strand, 35079109 - 35079193
Alignment:
Q  383 aaataacactacagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaataagattctgttcaaaccaac 467  Q
    ||||||||||||| ||||||||  || || |||||||||||||||||||||||||| || ||||||| ||||| | |||||||||    
T  35079109 aaataacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcatgaataacattctctccaaaccaac 35079193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 383 - 467
Target Start/End: Original strand, 35093199 - 35093283
Alignment:
Q  383 aaataacactacagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaataagattctgttcaaaccaac 467  Q
    ||||||||||||| ||||||||  ||||| |||||||||||||||||| ||||||| || ||||||| ||||| | |||||||||    
T  35093199 aaataacactacaaaattataagctgacattgttcatttacttcatctataagcatctcatgaataacattctctccaaaccaac 35093283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 387 - 472
Target Start/End: Complemental strand, 43029989 - 43029904
Alignment:
Q  387 aacactacagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaataagattctgttcaaaccaacaacca 472  Q
    ||||||| | ||||||||  || || |||||||||||||||||||||||||| || ||||||| ||||| | ||||||||||||||    
T  43029989 aacactataaaattataagctgtcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaacca 43029904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 382 - 438
Target Start/End: Original strand, 36741460 - 36741516
Alignment:
Q  382 taaataacactacagaattataaattgacaatgttcatttacttcatctttaagcat 438  Q
    |||||||||||||| |||||||| |||||| |||| |||||||||||||||||||||    
T  36741460 taaataacactacaaaattataagttgacattgtttatttacttcatctttaagcat 36741516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 397 - 470
Target Start/End: Original strand, 38155333 - 38155406
Alignment:
Q  397 aattataaattgacaatgttcatttacttcatctttaagcatttcttgaataagattctgttcaaaccaacaac 470  Q
    |||||||| |||||| ||||||| |||||||||||||||||| |  ||||| |||||| ||||||||| |||||    
T  38155333 aattataagttgacattgttcatgtacttcatctttaagcatcttatgaattagattccgttcaaaccgacaac 38155406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 779 - 837
Target Start/End: Original strand, 31450667 - 31450725
Alignment:
Q  779 cgatacgccccaatacgtatcgggagggtatctggagattaaattttattttaaaaaat 837  Q
    |||||| |||||||||||| |||||| |||| ||| |||||||||||||||| ||||||    
T  31450667 cgatacaccccaatacgtaccgggagagtatttggtgattaaattttatttttaaaaat 31450725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 383 - 469
Target Start/End: Complemental strand, 33864643 - 33864557
Alignment:
Q  383 aaataacactacagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaataagattctgttcaaaccaacaa 469  Q
    |||| |||||||||||| ||||  ||||| ||||||||||||||||| |||||||| ||  |||||| ||||| | | |||||||||    
T  33864643 aaatgacactacagaataataagctgacattgttcatttacttcatccttaagcatctcgcgaataacattctttcctaaccaacaa 33864557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 387 - 448
Target Start/End: Complemental strand, 42835671 - 42835610
Alignment:
Q  387 aacactacagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaata 448  Q
    ||||||||| ||||||||  || || |||||||||||||||||||||||||| || ||||||    
T  42835671 aacactacaaaattataaggtggcattgttcatttacttcatctttaagcatctcgtgaata 42835610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 508 - 603
Target Start/End: Original strand, 38283997 - 38284093
Alignment:
Q  508 tcaaatcattgtgaaaaaatcctacatattctatttttt-cctctcaaagttaaccatatgtggattttctggatgtggatttctgatctgaaaatt 603  Q
    |||||||||| ||| |||| ||| |||||||| || ||| ||||||||| | ||   |||||| |||||||||||||| |||||| |||||||||||    
T  38283997 tcaaatcattatgagaaaaccctgcatattctcttctttgcctctcaaaatcaatactatgtgaattttctggatgtgaatttcttatctgaaaatt 38284093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 671 - 744
Target Start/End: Complemental strand, 33864237 - 33864167
Alignment:
Q  671 tattttaattgaaataagatgttgtttattatgattaaggccatgtttgacaaggtcaaactgctagcttataa 744  Q
    |||||||||||||||||||||||   ||||||||| ||    ||||||||||||||||||||  ||||||||||    
T  33864237 tattttaattgaaataagatgtt---tattatgataaatattatgtttgacaaggtcaaactattagcttataa 33864167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 438
Target Start/End: Complemental strand, 34151066 - 34151011
Alignment:
Q  383 aaataacactacagaattataaattgacaatgttcatttacttcatctttaagcat 438  Q
    |||| ||| |||| ||||||||  ||||| ||||||||||||||||||||||||||    
T  34151066 aaatgacattacaaaattataagctgacattgttcatttacttcatctttaagcat 34151011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 438
Target Start/End: Original strand, 34176058 - 34176113
Alignment:
Q  383 aaataacactacagaattataaattgacaatgttcatttacttcatctttaagcat 438  Q
    |||| ||| |||| ||||||||  ||||| ||||||||||||||||||||||||||    
T  34176058 aaatgacattacaaaattataagctgacattgttcatttacttcatctttaagcat 34176113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 679 - 742
Target Start/End: Complemental strand, 44958436 - 44958373
Alignment:
Q  679 ttgaaataagatgttgtttattatgattaaggccatgtttgacaaggtcaaactgctagcttat 742  Q
    |||||||||| ||||||||||||||||||||    |||||||||| |||||| |||||| ||||    
T  44958436 ttgaaataagttgttgtttattatgattaagcttttgtttgacaatgtcaaattgctagtttat 44958373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 470
Target Start/End: Complemental strand, 45582229 - 45582150
Alignment:
Q  391 ctacagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaataagattctgttcaaaccaacaac 470  Q
    ||||| |||||||| ||||||  ||||||||||||| ||||| ||||| || ||||||| ||| ||  ||||||||||||    
T  45582229 ctacaaaattataagttgacatggttcatttacttcgtctttgagcatctcctgaataacattttgcacaaaccaacaac 45582150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 408 - 470
Target Start/End: Complemental strand, 44958769 - 44958707
Alignment:
Q  408 gacaatgttcatttacttcatctttaagcatttcttgaataagattctgttcaaaccaacaac 470  Q
    |||| |||| |||||||| |||||||||||| |||||||||| ||| |  |||||||||||||    
T  44958769 gacattgttgatttactttatctttaagcatctcttgaataacattatactcaaaccaacaac 44958707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 795 - 840
Target Start/End: Original strand, 21179916 - 21179961
Alignment:
Q  795 gtatcgggagggtatctggagattaaattttattttaaaaaataat 840  Q
    ||||| |||| ||||| | |||||||||||||||||||||||||||    
T  21179916 gtatcaggagagtatccgaagattaaattttattttaaaaaataat 21179961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 791 - 836
Target Start/End: Original strand, 35159941 - 35159986
Alignment:
Q  791 atacgtatcgggagggtatctggagattaaattttattttaaaaaa 836  Q
    ||||||||| |||| ||||| | |||||||||||||||||||||||    
T  35159941 atacgtatcaggagagtatccgaagattaaattttattttaaaaaa 35159986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 791 - 836
Target Start/End: Original strand, 40041455 - 40041500
Alignment:
Q  791 atacgtatcgggagggtatctggagattaaattttattttaaaaaa 836  Q
    ||||||||| |||| ||||| | |||||||||||||||||||||||    
T  40041455 atacgtatcaggagagtatccgaagattaaattttattttaaaaaa 40041500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 383 - 467
Target Start/End: Complemental strand, 9666719 - 9666635
Alignment:
Q  383 aaataacactacagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaataagattctgttcaaaccaac 467  Q
    ||||||||||||| |||||||| ||| || |||||||||||||||||||||| ||| || ||||||| ||||| | |||||||||    
T  9666719 aaataacactacaaaattataagttggcattgttcatttacttcatctttaaacatctcatgaataacattctctccaaaccaac 9666635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 770 - 836
Target Start/End: Complemental strand, 30284667 - 30284601
Alignment:
Q  770 atacctgcccgatacgccccaatacgtatcgggagggtatctggagattaaattttattttaaaaaa 836  Q
    ||||||||| |||||  ||| ||||||||| |||| ||||| | |||||||||||||||||||||||    
T  30284667 atacctgcctgatacttcccgatacgtatcaggagagtatccgaagattaaattttattttaaaaaa 30284601  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 791 - 836
Target Start/End: Original strand, 7629138 - 7629183
Alignment:
Q  791 atacgtatcgggagggtatctggagattaaattttattttaaaaaa 836  Q
    ||||||||| |||| ||||||| ||||||||||||||||| |||||    
T  7629138 atacgtatcaggagagtatctgaagattaaattttattttgaaaaa 7629183  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 383 - 469
Target Start/End: Complemental strand, 25570700 - 25570614
Alignment:
Q  383 aaataacactacagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaataagattctgttcaaaccaacaa 469  Q
    |||| |||||||||||||||||  ||||| ||||||||||||||||| |||||||| || ||||||| ||||| | | |||||||||    
T  25570700 aaatgacactacagaattataagctgacattgttcatttacttcatccttaagcatctcgtgaataacattctttcctaaccaacaa 25570614  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 383 - 469
Target Start/End: Complemental strand, 26005168 - 26005082
Alignment:
Q  383 aaataacactacagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaataagattctgttcaaaccaacaa 469  Q
    |||| |||||||||||||||||  ||||| ||||||||||||||||| |||||||| || ||||||| ||||| | | |||||||||    
T  26005168 aaatgacactacagaattataagctgacattgttcatttacttcatccttaagcatctcgtgaataacattctttcctaaccaacaa 26005082  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 450
Target Start/End: Original strand, 4161451 - 4161524
Alignment:
Q  377 ataaataaataacactacagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaataag 450  Q
    ||||||||||||||||||| |||||||| ||| || ||||||| |||||||||||||||||  || ||||||||    
T  4161451 ataaataaataacactacaaaattataagttggcattgttcatctacttcatctttaagcacctcatgaataag 4161524  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 671 - 744
Target Start/End: Complemental strand, 25570278 - 25570205
Alignment:
Q  671 tattttaattgaaataagatgttgtttattatgattaaggccatgtttgacaaggtcaaactgctagcttataa 744  Q
    |||||||||||||||| ||||||||||||||||||  |    ||||||||||||||||||||  ||||||||||    
T  25570278 tattttaattgaaatacgatgttgtttattatgatagatattatgtttgacaaggtcaaactattagcttataa 25570205  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 377 - 450
Target Start/End: Original strand, 4223071 - 4223144
Alignment:
Q  377 ataaataaataacactacagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaataag 450  Q
    ||||||||||||| ||||| |||||||| ||| || ||||||| |||||||||| ||||||  || ||||||||    
T  4223071 ataaataaataaccctacaaaattataagttggcattgttcatctacttcatctgtaagcacctcatgaataag 4223144  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 383 - 429
Target Start/End: Complemental strand, 26123941 - 26123895
Alignment:
Q  383 aaataacactacagaattataaattgacaatgttcatttacttcatc 429  Q
    |||| |||||||||||||||||  ||||| |||||||||||||||||    
T  26123941 aaatgacactacagaattataagctgacattgttcatttacttcatc 26123895  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 873 - 925
Target Start/End: Complemental strand, 1553888 - 1553836
Alignment:
Q  873 gatagacggtggaaaattgatacatgcggatgcacaatgtttctattattttt 925  Q
    |||||||||||||||||||||||  |||||| ||| |||||||||||||||||    
T  1553888 gatagacggtggaaaattgatacgcgcggatacacgatgtttctattattttt 1553836  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 770 - 836
Target Start/End: Original strand, 28968568 - 28968634
Alignment:
Q  770 atacctgcccgatacgccccaatacgtatcgggagggtatctggagattaaattttattttaaaaaa 836  Q
    |||||||||||||||  ||| ||||||||| | || ||||| | ||||||||||||||||| |||||    
T  28968568 atacctgcccgatacttcccgatacgtatcagaagagtatccgaagattaaattttatttttaaaaa 28968634  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 770 - 831
Target Start/End: Original strand, 25700818 - 25700879
Alignment:
Q  770 atacctgcccgatacgccccaatacgtatcgggagggtatctggagattaaattttatttta 831  Q
    ||||||||| |||||  || |||||||||| |||| ||||| | ||||||||||||||||||    
T  25700818 atacctgcctgatacttcctaatacgtatcaggagagtatccgaagattaaattttatttta 25700879  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 791 - 836
Target Start/End: Complemental strand, 30787601 - 30787556
Alignment:
Q  791 atacgtatcgggagggtatctggagattaaattttattttaaaaaa 836  Q
    ||||||||| |||| ||||| | |||||||||||||||||||||||    
T  30787601 atacgtatcaggagagtatccgaagattaaattttattttaaaaaa 30787556  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 52214733 - 52214804
Alignment:
Q  379 aaataaataacactacagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaataag 450  Q
    ||||||||||||||||| |||||||| |||  | ||||||| |||||||||||||||||  || ||||||||    
T  52214733 aaataaataacactacaaaattataagttgggattgttcatctacttcatctttaagcacctcatgaataag 52214804  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 791 - 836
Target Start/End: Complemental strand, 2223018 - 2222973
Alignment:
Q  791 atacgtatcgggagggtatctggagattaaattttattttaaaaaa 836  Q
    ||||||||| |||| ||||||| |||||||||||||||| ||||||    
T  2223018 atacgtatcaggagagtatctgaagattaaattttatttaaaaaaa 2222973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 791 - 840
Target Start/End: Complemental strand, 34432422 - 34432373
Alignment:
Q  791 atacgtatcgggagggtatctggagattaaattttattttaaaaaataat 840  Q
    ||||||||| |||| ||||| | ||||||||||||||||| |||||||||    
T  34432422 atacgtatcaggagagtatccgaagattaaattttatttttaaaaataat 34432373  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 770 - 830
Target Start/End: Original strand, 17702553 - 17702613
Alignment:
Q  770 atacctgcccgatacgccccaatacgtatcgggagggtatctggagattaaattttatttt 830  Q
    |||||| |||||||| || | |||||||||||||| ||||||| | |||||||||||||||    
T  17702553 ataccttcccgatactcctcgatacgtatcgggagagtatctgaaaattaaattttatttt 17702613  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 770 - 844
Target Start/End: Original strand, 32877495 - 32877572
Alignment:
Q  770 atacctgcccgatacgccccaatacgtatcgggagggtatctggagattaaattttatttt---aaaaaataattttc 844  Q
    |||||||||||||||  ||| |||||||||||||| |||||   | |||||||||||||||   ||||||||||||||    
T  32877495 atacctgcccgatacttcccgatacgtatcgggagagtatccaaatattaaattttattttttaaaaaaataattttc 32877572  T

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Target: scaffold0176 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 388 - 438
Target Start/End: Original strand, 20474 - 20524
Alignment:
Q  388 acactacagaattataaattgacaatgttcatttacttcatctttaagcat 438  Q
    |||||||| ||||||||  ||||| ||||||||||||||||| ||||||||    
T  20474 acactacaaaattataagctgacattgttcatttacttcatccttaagcat 20524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 770 - 836
Target Start/End: Original strand, 17892306 - 17892372
Alignment:
Q  770 atacctgcccgatacgccccaatacgtatcgggagggtatctggagattaaattttattttaaaaaa 836  Q
    |||||||||||||||  ||| ||| ||||| | || ||||| | |||||||||||||||||||||||    
T  17892306 atacctgcccgatacttcccgatatgtatcagaagagtatccgaagattaaattttattttaaaaaa 17892372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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