View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2225-3-Insertion-23 (Length: 120)

Name: NF2225-3-Insertion-23
Description: NF2225-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2225-3-Insertion-23
NF2225-3-Insertion-23
[»] chr5 (1 HSPs)
chr5 (11-102)||(42951210-42951301)
[»] chr8 (2 HSPs)
chr8 (18-102)||(2852846-2852930)
chr8 (18-102)||(2904878-2904962)


Alignment Details
Target: chr5 (Bit Score: 92; Significance: 4e-45; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 4e-45
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 42951210 - 42951301
Alignment:
Q  11 gcaatactggttagataaataaatttctgagttagttttgttttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42951210 gcaatactggttagataaataaatttctgagttagttttgttttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaa 42951301  T

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Target: chr8 (Bit Score: 73; Significance: 8e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 8e-34
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 2852846 - 2852930
Alignment:
Q  18 tggttagataaataaatttctgagttagttttgttttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaa 102  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2852846 tggttagagaaataaatttctgtgttagttttgttttttaagtaatcaatgtacaactcctccaaaagtaatcatgtacaatgaa 2852930  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 8e-34
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 2904878 - 2904962
Alignment:
Q  18 tggttagataaataaatttctgagttagttttgttttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaa 102  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2904878 tggttagagaaataaatttctgtgttagttttgttttttaagtaatcaatgtacaactcctccaaaagtaatcatgtacaatgaa 2904962  T

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