View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2225-3-Insertion-4 (Length: 968)
Name: NF2225-3-Insertion-4
Description: NF2225-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225-3-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 555; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 8 - 663
Target Start/End: Complemental strand, 36417083 - 36416416
Alignment:
| Q |
8 |
taaccagatataaacagcttattaaccaaatgtgtgtgaattgcattaacatctctaattttattgttattttcaattaacctttcacagacaaagtccg |
107 |
Q |
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| T |
36417083 |
taaccagatataaacagcttattaaccaaatgtgtgtgaattgcattaacatctctaattttattgttattttcaattaacctttcacagacaaagtccg |
36416984 |
T |
|
| Q |
108 |
tgtgtgccatcatgtcagcacacaacaacagaacagaaaagaaagaaaggtgtgtttgtttggcttttcattttcaaaacatcaaatttaattacctcgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36416983 |
tgtgtgccatcatgtcagcacacaacaacagaacagaaaagaaagaaaggtgtgtttgtttggcttttcattttcaaaacatcaaatttaattacctcgt |
36416884 |
T |
|
| Q |
208 |
aatacgtnnnnnnnnnnnnn---------ccacttctctctctcacatacagacaaagtggctatgacagta---atataacactagtctcaggtttcac |
295 |
Q |
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||||||| |||||| |||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||| |
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| T |
36416883 |
aatacgtaaaaaaaataaaaaataaaaaaccacttttctctctcacatacagacaaagtggccatgacagtagtaatataacaccagtctcaggtttcac |
36416784 |
T |
|
| Q |
296 |
atttctctccttctccctgtgttgctttgttctctctgcacaatacaaatttaccaatcagtgatcttcacactcctgccatggcattttccacacccac |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36416783 |
atttctctccttctccctgtgttgctttgttctctctgcacaatacaaatttaccaatcagtggccttcacactcctgccatggcattttccacacccac |
36416684 |
T |
|
| Q |
396 |
ctacccaactcatgttttctgctttaaaggtatattttttaccctcctctttctcacccattttctattcttatagggttttggttggttaaaatagtac |
495 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36416683 |
ctccccaactcatgttttctgctttaaaggtatattttttaccctcctctttctcacccattttctattcttatagggttttggttggttaaaatagtac |
36416584 |
T |
|
| Q |
496 |
tattaatataaactctcttatttgattttgagctttttgtgtgtgtaatgtgtatactaaaacccttaagtgggcttcattttctgatgtgggtgtatct |
595 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36416583 |
tattaatataaactctcttatttgattttgagctttttgtgtgtgtaatgtgtatactaaaacccttaagtgggcttcattttctgatgtgggtgtatct |
36416484 |
T |
|
| Q |
596 |
atgtacattctattttctgctagtagttctcatgtgggtttctttttgtagtcattcttattgataaa |
663 |
Q |
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| T |
36416483 |
atgtacattctattttctgctagtaattctcatgtgggtttctttttgtagtcattcttattgataaa |
36416416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 705 - 965
Target Start/End: Complemental strand, 36416394 - 36416125
Alignment:
| Q |
705 |
gcttaaggattgattgtgtttcttttattttgtgaaatgggttggaggggttagattaaatcaactttctgtgatgtaagaaattcacataaatggatct |
804 |
Q |
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| T |
36416394 |
gcttaaggattgattgtgtttcttttattttgtgaaatgggttggaggggttagattaaatcaactttctgtgatgtaagaaattcacataaatggatct |
36416295 |
T |
|
| Q |
805 |
taggaaatgggataataagtcctctttatttttgctttatggttctgtattgttgtgtccaacaatatccgttgt--ggtaatattg-taatgatagtca |
901 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||| |
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| T |
36416294 |
taggaaatgggataataagtcctctttatttttgctttatggttctgtattgttgtgtccaacaatatccgttgttggttaatattgttaatgatagtca |
36416195 |
T |
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| Q |
902 |
ttcca-tatg-tgcatttaggagatgtcac-tgcttgtaga--tg-ttgtgatgtgtaagaagagatagt |
965 |
Q |
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| T |
36416194 |
ttccattatgttgcatttaggagatgtcacttgcttgtagaattgtttgtgatgtgtaagaagagatagt |
36416125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 555
Target Start/End: Original strand, 36415412 - 36415447
Alignment:
| Q |
520 |
attttgagctttttgtgtgtgtaatgtgtatactaa |
555 |
Q |
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| T |
36415412 |
attttaagctttttgtgtgtgtaatgtgtatactaa |
36415447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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