View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2225-3-Insertion-5 (Length: 951)
Name: NF2225-3-Insertion-5
Description: NF2225-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225-3-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 387 - 940
Target Start/End: Complemental strand, 48153856 - 48153295
Alignment:
| Q |
387 |
atttatcttcctgtggtctagcctattaactttaataaatttggactgatgtccctaattcttgttgtggaaatactcctgcttatgtcaaattattctg |
486 |
Q |
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| T |
48153856 |
atttatcttcctgtggtctagcctattaactttaataaatttggactgatgtccctaattcttgttgtggaaatactcctgcttatgtcaaattattctg |
48153757 |
T |
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| Q |
487 |
tacattatgtctgaagtttctctttattatgaagtggatatcgaactgctccaatgcatgtggcagaagctgatcaagctcaccttgctggccgaagggg |
586 |
Q |
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| T |
48153756 |
tacattatgtctgaagtttctctttgttatgaagtggatatcgaactgctccaatgcatgtggcagaagctgatcaagctcaccttgctggccgaagggg |
48153657 |
T |
|
| Q |
587 |
ccgtgg---------gcatgggcgtggtcatgttcttatgcctgtggttgagggaccatatccgcaacatccagaagccgatcaagctcaccttgctggc |
677 |
Q |
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| T |
48153656 |
ccgtggtggccgtgggcatgggcgtggtcatgttcttatgcctgtggttgagggaccatatccgcaacatccagaagccgatcaagctcaccttgctggt |
48153557 |
T |
|
| Q |
678 |
ggaaggggccgtggtgggcgtggtcgtgttcgtaggcgctatgatacacctctaccaccaattgaacccgtctttgattttattagggactcaagtagcc |
777 |
Q |
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| T |
48153556 |
ggaaggggccgtggtgggcgtggtcgtgttcgtaggcgctatgatacacctctaccaccaattgaacccgtctttgattttatta-ggactcaagtagcc |
48153458 |
T |
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| Q |
778 |
tttcttgagactatggttgacaacaaggtagaaactaaggtgaaagctgttgtggatactaggttcgatgccctagagcatctcatccgtaatgttaccc |
877 |
Q |
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| T |
48153457 |
tctcttgagactatggttgacaacaaggtagaaactaaggtgaaagctgttgtggatcctaggttcgatgccctagagcatctcatccgtaatgttaccc |
48153358 |
T |
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| Q |
878 |
gcaattaaagatgttaagatgtttcttaacaatttaattttggcttttgaatgatcttttctg |
940 |
Q |
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| T |
48153357 |
gcaattaaagatgttaagatgtttcttaacaatttaaattttgcttttgaacgatcttttctg |
48153295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 48154266 - 48153889
Alignment:
| Q |
7 |
aatgtttaccatcaacagggagggactaattatcagccattgaattttaagaccgggtctagtttcgaacttcatgagccgttgaactttggcactgtgg |
106 |
Q |
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| T |
48154266 |
aatgtttaccatcaacagggatggactaattatcagccattgaattttaacaccgggtctagtttcgaacttcatgagccgttgaactttggcattgtgg |
48154167 |
T |
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| Q |
107 |
ctcacaccacattgaacgatccaagttttagtgtatttatttgtgcaaattggataccaagttttggttgttccttgtgttaagtgtttgttgtggtg-- |
204 |
Q |
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| T |
48154166 |
ctcacaccacattgaacgatccaagttttagtctatttatttgtgcaaattggataccaagatttggttgttccttgtgttaagtgtttgttgtggtgtt |
48154067 |
T |
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| Q |
205 |
tttggtaacactatttatttattgtcttttctgtgtcattatgatacttaatagacttcaaatgttgctcagtcgaagtgttgaactaaataattaatgc |
304 |
Q |
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| T |
48154066 |
tttggtaacac----tatttattgtcttttctgtgtcattctgatacttaatagacttcaaatgttgctcagtcgaagtgttgaacta---aattaatgc |
48153974 |
T |
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| Q |
305 |
tgcaatgttgttgatacatattatgaatgttttccttggtgttattttgaagtaattatatgaattattgtttctgtccccaatt |
389 |
Q |
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| T |
48153973 |
tgcaatgtttttgatacatattatgaatgttttccttggtgttattttgaagtaattatatgaattattgtttctgtccccaatt |
48153889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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