View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2225-3-Insertion-6 (Length: 947)
Name: NF2225-3-Insertion-6
Description: NF2225-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225-3-Insertion-6 |
 | |
|
| [»] chr8 (13 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 792; Significance: 0; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 792; E-Value: 0
Query Start/End: Original strand, 8 - 947
Target Start/End: Original strand, 454958 - 455902
Alignment:
| Q |
8 |
attttactatcaccaccttatctatcctttcctcttatctaaagtctattaagtaatttattgtttctattccnnnnnnncacaggagaagagaaactct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
454958 |
attttactatcaccaccttatctatcctttcctcttatctaaagtttattaagtaatttattgtttctattcctttttttcacaggagaa-----actct |
455052 |
T |
|
| Q |
108 |
cgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcctttttctttttcttctcaatatgaatatggt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
455053 |
cgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcctttttctttttcttctcaatatgaat--ggt |
455150 |
T |
|
| Q |
208 |
gcttatcgttatgatgtgaaattgataaaaagttgactcttttatgtttatttttgttgggatattttgcagcattacgttatatcaaaatttatatttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
455151 |
gcttatcgttatgatgtgaaattgataaaaagttgactcttttatgtttatttttgttgggatattttgcagcattactttatatcaaaatttatatttt |
455250 |
T |
|
| Q |
308 |
gagggtctatatctatcatcttcttcaactgcaactgccatgatcaatcttactccagcagtcacatttgttatagcaacctttgttgggtaattatata |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
455251 |
gagggtctatatctatcatcttcttcaactgcaactgccatgatcaatcttactccagcagtcacatttgttatagcaacctttgttgggtaattatata |
455350 |
T |
|
| Q |
408 |
ctaatcttactaaacccaacttaattacttttgttgagtttgaatcatttttattgaatatattacagaatggagaaagtgaatattcaaagtttgagaa |
507 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
455351 |
ctaatcttactaaactcaac----ttacttttgttgagtttgaatcatttttattgaatatattacagaatggagaaagtgaatattcaaagtttgagaa |
455446 |
T |
|
| Q |
508 |
ctatagccaaaatagttgggacaatgatatgtgttactggagcag------tgtccatgacattattgaagggtccaaaactactaaatgcagatcataa |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
455447 |
ctatagccaaaatagttgggacaatgatatgtgttactggagcagtgtcactgtccatgacattattgaagggtccaaaactactaaatgcagatcataa |
455546 |
T |
|
| Q |
602 |
gatgccttcaaaaacaatgatgaccacaaccttggaaagtgatgagaattggttgattggttgtctctttctgttgggaagtagtgttgccggctcaatt |
701 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
455547 |
gatgccttcaaaaacaatgatgaccacaaccttggaaagtgatgagaattggttgattggttgtctctttctgttgggaagtagtgttgccggctcaatt |
455646 |
T |
|
| Q |
702 |
tggctaattttgcaggtatttgattgtgacaatataagtatcacttttagtgggtgaggttgaggttgagggcctacgtacgatgaaaccatgtgc---- |
797 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
455647 |
tggctaattttgcaggtatttgattgtaacaatataagtatcacttttagtgggtgaggttgaggttgaggacctacgtacgatgaaaccatgtgcttta |
455746 |
T |
|
| Q |
798 |
-----tttattggttaaaaaccaacttcaccatggtaaaaaactttagggttatgcatctcttagagcactagttaagaagataaaactcgtctt-gtct |
891 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
455747 |
tttgatttattggttaaaaaccaacttcaccatggtaaaaaactttagggttatgcgtctcgtagagcactagttaagaagataaaactcgtcttggtct |
455846 |
T |
|
| Q |
892 |
ctcttgtcatgcatatataatatattgcccccgtacattcatttacattgggatcg |
947 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
455847 |
ctcttatcatgcatatataatatattgcccccgtacattcatttacattgggatcg |
455902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 460 - 667
Target Start/End: Original strand, 467683 - 467890
Alignment:
| Q |
460 |
attgaatatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttactggagcagtgtccat |
559 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| | |||||||||||| || |
|
|
| T |
467683 |
attgattatattacagaatggaaaaagtgaatattcgaagtataagaactatagccaaaatagtggggacaattatatgtgtaagtggagcagtgtcaat |
467782 |
T |
|
| Q |
560 |
gacattattgaagggtccaaaactactaaatgcagatcataagatgccttcaaaaacaatgatgaccacaaccttg---gaaagtgatgagaattggttg |
656 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||| | ||||||| |||| ||| |||||||||| | ||||||||||||||||||| |
|
|
| T |
467783 |
tgcattgttgaagggtccaaaactactaaatgcagat---aagatactttcaaaatcaatcatggccacaaccttattaggaagtgatgagaattggttg |
467879 |
T |
|
| Q |
657 |
attggttgtct |
667 |
Q |
| |
|
|||| ||||| |
|
|
| T |
467880 |
cttggatgtct |
467890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 465 - 722
Target Start/End: Original strand, 474722 - 474979
Alignment:
| Q |
465 |
atatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttactggagcagtgtccatgacat |
564 |
Q |
| |
|
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| |||||| | ||||||||| ||||||| |||| || ||| |
|
|
| T |
474722 |
atatattacagaatggagaaagtcaacattcgaagtttgagaactatagccaaaatagtagggacattaatatgtgtttgtggagcattgtctatagcat |
474821 |
T |
|
| Q |
565 |
tattgaagggtccaaaactactaaatgcagatcataagatgccttcaaaaacaatgatgaccacaaccttggaaagtgatgagaattggttgattggttg |
664 |
Q |
| |
|
| |||||||||||||| |||||||||||||| | | | ||| ||||| | || ||| ||| ||||| | |||||||| | ||||||| |||| || |
|
|
| T |
474822 |
tgttgaagggtccaaagctactaaatgcagaaaacatactacctacaaaatctatcatggccataacctccggtagtgatgatagttggttgcttggatg |
474921 |
T |
|
| Q |
665 |
tctctttctgttgggaagtagtgttgccggctcaatttggctaattttgcaggtattt |
722 |
Q |
| |
|
| | | ||| |||||||||||||||||| | ||| ||||||| ||||||||||||||| |
|
|
| T |
474922 |
tgtgtatcttttgggaagtagtgttgcctggtcactttggctcattttgcaggtattt |
474979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 460 - 722
Target Start/End: Original strand, 446673 - 446935
Alignment:
| Q |
460 |
attgaatatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttactggagcagtgtccat |
559 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||| || ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
446673 |
attgattatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggagcaatgtccat |
446772 |
T |
|
| Q |
560 |
gacattattgaagggtccaaaactactaaatgcagatcataagatgccttcaaaaacaatgatgaccacaaccttggaaagtgatgag---aattggttg |
656 |
Q |
| |
|
|||| || |||||||||||||| ||||||||| | || || |||||||| |||| ||| ||||||||| | |||||||||| || ||||| |
|
|
| T |
446773 |
cgcattgttaaagggtccaaaacttttaaatgcag---aaaatatatcttcaaaatcaatcatggccacaacctcgacaagtgatgagaacaactggttt |
446869 |
T |
|
| Q |
657 |
attggttgtctctttctgttgggaagtagtgttgccggctcaatttggctaattttgcaggtattt |
722 |
Q |
| |
|
|||| ||||| |||| |||||||||| ||||| || |||| |||||| ||||||||||||||| |
|
|
| T |
446870 |
cttggatgtctaattcttttgggaagtactgttggagggtcaacttggctcattttgcaggtattt |
446935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 290 - 392
Target Start/End: Original strand, 446507 - 446609
Alignment:
| Q |
290 |
tatcaaaatttatattttgagggtctatatctatcatcttcttcaactgcaactgccatgatcaatcttactccagcagtcacatttgttatagcaacct |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||| ||||| |||||||| |||||||| ||||||| |||||||||| |||||| ||| |
|
|
| T |
446507 |
tatcaaaatttatattttgagggtctatatctatcttctgcttcaattgcaagtgccatgaacaatcttattccagcaatcacatttgtaatagcagcct |
446606 |
T |
|
| Q |
390 |
ttg |
392 |
Q |
| |
|
||| |
|
|
| T |
446607 |
ttg |
446609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 466 - 588
Target Start/End: Original strand, 480070 - 480192
Alignment:
| Q |
466 |
tatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttactggagcagtgtccatgacatt |
565 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| |||||| |||||||| | | ||||||||| || || |||| |
|
|
| T |
480070 |
tatattacagaatggagaaagtaaatattcgaagtatgagaactatagccaaaatagtggggacagtgatatgtataagtggagcagtatctattgcatt |
480169 |
T |
|
| Q |
566 |
attgaagggtccaaaactactaa |
588 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
480170 |
gttgaagggtccaaagctactaa |
480192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 292 - 385
Target Start/End: Original strand, 474543 - 474636
Alignment:
| Q |
292 |
tcaaaatttatattttgagggtctatatctatcatcttcttcaactgcaactgccatgatcaatcttactccagcagtcacatttgttatagca |
385 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||||| ||| ||||||||||||||||||||| |
|
|
| T |
474543 |
tcaaaatctatattttgagggtctatatctatcttcttcttcaattgcaagtgccatgaccaatcttattcctgcagtcacatttgttatagca |
474636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 262 - 403
Target Start/End: Original strand, 467485 - 467626
Alignment:
| Q |
262 |
tgttgggatattttgcagcattacgttatatcaaaatttatattttgagggtctatatctatcatcttcttcaactgcaactgccatgatcaatcttact |
361 |
Q |
| |
|
||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||| ||||||| | |
|
|
| T |
467485 |
tgttgggatatattgcagcattacattgaatcaaaatttatattttgagggtctatatctttcttcttcttcagttgcaagtgccatttccaatcttctt |
467584 |
T |
|
| Q |
362 |
ccagcagtcacatttgttatagcaacctttgttgggtaatta |
403 |
Q |
| |
|
|| |||||||||||||| || ||| |||| || ||||||||| |
|
|
| T |
467585 |
ccggcagtcacatttgtaattgcagccttagtagggtaatta |
467626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 466750 - 466828
Alignment:
| Q |
98 |
gagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcc |
176 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
466750 |
gagaaactctggctcatattccttgaatttaaggagtttttccttgattttcatgacctcactaattgggtttgtttcc |
466828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 269 - 403
Target Start/End: Original strand, 479856 - 479990
Alignment:
| Q |
269 |
atattttgcagcattacgttatatcaaaatttatattttgagggtctatatctatcatcttcttcaactgcaactgccatgatcaatcttactccagcag |
368 |
Q |
| |
|
|||| |||||||||||| || |||||||||||| |||||||||| ||| |||| | ||| ||||| ||||| ||||||| ||| ||| |||||||| |
|
|
| T |
479856 |
atatgttgcagcattacattgaatcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtccaaccttgttccagcag |
479955 |
T |
|
| Q |
369 |
tcacatttgttatagcaacctttgttgggtaatta |
403 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
479956 |
tcacatttgtaatagcagcctttgtagggtaatta |
479990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 474235 - 474295
Alignment:
| Q |
98 |
gagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctca |
158 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
474235 |
gagaaactctgcctcttattccttaaatttaaggagtttttccttgattttcatgacctca |
474295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 446016 - 446101
Alignment:
| Q |
98 |
gagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcctttttct |
183 |
Q |
| |
|
|||||||||| ||| || |||||||| |||| |||||||||||||| |||||||| ||||||||| ||||||||| | |||||| |
|
|
| T |
446016 |
gagaaactctgcctcctactccttaaacttaaggagtttttcctggatattcatgacttcactaattaggtttgttttcattttct |
446101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 479701 - 479779
Alignment:
| Q |
98 |
gagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcc |
176 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| |||||||| | | | ||| | ||||||||||||||||| |||||| |
|
|
| T |
479701 |
gagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttcc |
479779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 464 - 722
Target Start/End: Complemental strand, 27491653 - 27491398
Alignment:
| Q |
464 |
aatatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttactggagcagtgtccatgaca |
563 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||| | || ||||| ||| |||| | ||||||||||| ||| || |
|
|
| T |
27491653 |
aatattttacagaatggagcaagtgaatattagaagtttgagaactatagccaaaataataggaacaattataggtgtaagtggagcagtgttcattgca |
27491554 |
T |
|
| Q |
564 |
ttattgaagggtccaaaactactaaatgcagatcataag-atgccttcaaaaacaatgatgaccacaaccttggaaagtgatgagaattggttgattggt |
662 |
Q |
| |
|
|||||||||||||||| || ||||||||||| ||| || |||||||| |||| || ||||||||| | ||||||||||||||||||| |||| |
|
|
| T |
27491553 |
ctattgaagggtccaaagctgctaaatgcaga----aagcataacttcaaaatcaatcattggcacaaccttaggaagtgatgagaattggttgcttgga |
27491458 |
T |
|
| Q |
663 |
tgtctctttctgttgggaagtagtgttgccggctcaatttggctaattttgcaggtattt |
722 |
Q |
| |
|
||| | |||| || ||||| |||||||| | ||| ||||||| ||||||||||||||| |
|
|
| T |
27491457 |
tgtttggttctttttggaagctgtgttgcctggtcagtttggcttattttgcaggtattt |
27491398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 27493602 - 27493542
Alignment:
| Q |
115 |
attccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttc |
175 |
Q |
| |
|
||||||||||||||| |||||||| ||||| ||||| || |||||| ||||||||||||| |
|
|
| T |
27493602 |
attccttaaatttaaagagtttttcttggatattcatcacttcactagttgggtttgtttc |
27493542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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