View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2225-3-Insertion-8 (Length: 941)
Name: NF2225-3-Insertion-8
Description: NF2225-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225-3-Insertion-8 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-136; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 258 - 586
Target Start/End: Complemental strand, 3311501 - 3311180
Alignment:
| Q |
258 |
gttagtagttgaatggaaattttatttgaggaccatatttagtaattataaaacaaaagtacaaaatgatnnnnnnnnnnncaaaacaaattagagtagc |
357 |
Q |
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| T |
3311501 |
gttagtagttgaatgaaaattttatttgaggaccatatttagtaattataaaacaaaagtacaaaatgataaaaa------caaaacaaattagagtagc |
3311408 |
T |
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| Q |
358 |
aaagtggttgtagcctctttggagcacactacatcaaatacactccaaaggattcttatttcttatattctagcatcattccaaattctctttaccattt |
457 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3311407 |
aaagtggttgtagcctctttggagcacactacatcaaatacactccaaaggattcttatttcttatattctagcatcattccaaattctctttaccattt |
3311308 |
T |
|
| Q |
458 |
gattttcctttctccatttttagctcacaccgctatgattttcacatgcaatgnnnnnnnnngtttgtatttttcacatgcaattttgtcacaaacatct |
557 |
Q |
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| T |
3311307 |
gattttcctttctccatttttagctcacaccgctatgattttcacatgcaatg-ttttttttgtttgtatttttcacatgcaattttgtcacaaacatct |
3311209 |
T |
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| Q |
558 |
ccttacgaaacaatttgaacatgcaccca |
586 |
Q |
| |
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|||||| ||||||||||||||||| |||| |
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| T |
3311208 |
ccttacaaaacaatttgaacatgctccca |
3311180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 3311754 - 3311555
Alignment:
| Q |
8 |
ttatgaaggcataccccggtcgtgttagaggcaacaggacgaccacaaaagtcttgtctaggcaaaggtcatacgtgatagacttggagcgtctcaagtg |
107 |
Q |
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| T |
3311754 |
ttatggaggcataccccagtcgtgttagaggcaacaggacgaccacaaaagtcttgtctaggcaaaggtcatacgtgatagactcggagcgtctcaagtg |
3311655 |
T |
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| Q |
108 |
tcaaaggcagcatatgagccccaacataaggaaggaggttgagatatagaaggaggcaccgcg---acctcaagatttatatcctggtggaaattatctc |
204 |
Q |
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| T |
3311654 |
tcaaaggcagcatatgagccccaacataaggaaggaggttgagatatagaaggaggcaccgcgacaacctcaagatttatatcctggtgaaaattatctc |
3311555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 633 - 764
Target Start/End: Complemental strand, 3311132 - 3311002
Alignment:
| Q |
633 |
caatagatgctctgccctaaatctctaacnnnnnnnnaaccacctctccacccttttccaattggcatcttcctaatgcctttaacctaatttaccgtat |
732 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3311132 |
caatagatgctctgctctaaatctctaactttttgt-aaccacctctccacccttttccaattggcatcttcctaatgcctttaacctaatttaccttat |
3311034 |
T |
|
| Q |
733 |
aaatagtaaccataaatcagggctaggggaat |
764 |
Q |
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| T |
3311033 |
aaatagtaaccataaatcaaggctaggggaat |
3311002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 822 - 937
Target Start/End: Complemental strand, 3310941 - 3310829
Alignment:
| Q |
822 |
tagtgaaacccaaacacattgtcacatatatcttcaccatcctctacacatcaccatgaaccccgaccctcagatttaataaagacttcgatatctaatc |
921 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |
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| T |
3310941 |
tagtgaaacc-aaacacattgccacatatatcttcaccatcctctacacatcaccatgaaccccggcccccagatttaataaa-acttcgatatctaatc |
3310844 |
T |
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| Q |
922 |
tcataacaaactctcc |
937 |
Q |
| |
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|||| ||||||||||| |
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| T |
3310843 |
tcat-acaaactctcc |
3310829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 417 - 509
Target Start/End: Complemental strand, 3319006 - 3318912
Alignment:
| Q |
417 |
ttcttatatt-ctagcatcattccaaattctctttaccatttgattttccttt-ctccatttttagctcacaccgctatgattttcacatgcaat |
509 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3319006 |
ttcttatatttctagcatcattccaaattcactttaccatttacttttccttttctccatttttagctcacaccgctatgattttcacatgcaat |
3318912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 258 - 327
Target Start/End: Complemental strand, 3319138 - 3319069
Alignment:
| Q |
258 |
gttagtagttgaatggaaattttatttgaggaccatatttagtaattataaaacaaaagtacaaaatgat |
327 |
Q |
| |
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||||| ||||||||||||| ||| ||| |||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
3319138 |
gttagcagttgaatggaaactttgtttaaggaccttatttagtaattacaaaacaaaagtacaaaatgat |
3319069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 831 - 885
Target Start/End: Complemental strand, 3318722 - 3318668
Alignment:
| Q |
831 |
ccaaacacattgtcacatatatcttcaccatcctctacacatcaccatgaacccc |
885 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||| || |||||| |
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| T |
3318722 |
ccaaacacattgccacatatatcttcaccatcctctacacatcactataaacccc |
3318668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 744
Target Start/End: Complemental strand, 3318851 - 3318776
Alignment:
| Q |
670 |
aaccacctctccacccttttcc--aattggcatcttcctaatgcctttaacctaatttaccgtataaatagtaacca |
744 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
3318851 |
aaccacctctccaccctttcaataaattggcatcttcctaatgc-tttaacctaatttctagtataaatagtaacca |
3318776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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