View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2225-Insertion-1 (Length: 1049)
Name: NF2225-Insertion-1
Description: NF2225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225-Insertion-1 |
 | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 782; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 782; E-Value: 0
Query Start/End: Original strand, 38 - 939
Target Start/End: Complemental strand, 40910583 - 40909691
Alignment:
| Q |
38 |
ctcctaactaaccatactaaataaattgaaccttaacatacaacactgaggttgctattagtaaatagaactcaaaatatacacatgatcttaaaagagt |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40910583 |
ctcctaactaaccatactaaataaattgaaccttaacatacaacactgaggttgctattagtaaatagaactcaaaatatacacatgattttaaaagagc |
40910484 |
T |
|
| Q |
138 |
tgtacaattacatttattaagaattgaatttgttaaaaatcatcacaacatttataggtatagtttaatcaaaacttatgaatgatgaaagaacatgtac |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40910483 |
tgtacaattacatttattaagaattgaatttgttaaaaataatcacaacatttataggtatagtttaatcaaaacttatgaatgatgaaagaacatgtac |
40910384 |
T |
|
| Q |
238 |
tatcagccttatcacaaatcataaatctggtttacgtatatcaatttcaccacacttcttttagcatgtatctcaatgaacttgcagcaaacactactca |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40910383 |
tatcagccttatcacaaatcataaatctggtttacgtagatcaatttcaccacacttattttagcatgtatctcaatgaacttgcagcaaacactactca |
40910284 |
T |
|
| Q |
338 |
agagctaatgttaataaatatagaactaatagaactaaaacttattataatagagtaagtttgagctttccataggcatctgttgctcacaaacacacaa |
437 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40910283 |
agagctaatgttaataaatataaaactaatagaactaaaacttattataatagagtaagtttgagctttccataggcatctgatgctcacaaacacacaa |
40910184 |
T |
|
| Q |
438 |
ccccttgtgaggagatgataaataaaaag--gagtaaattgaaattcaaacaaaggaagaaactcttcaactatcaagttaatttcaagtttcagttaat |
535 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
40910183 |
ccccttgtgaggagatgagaaataaaaaggagagtaaattgaaattcaaacaaaggaagaaactcttcaattattaagttaatttcaagtttcagttaat |
40910084 |
T |
|
| Q |
536 |
aatctctattaaacaatagccaaaaaccatttaaatctgagatatgtagccattgtttgctcagagagaatgcagttaaatagctactataaatctgagg |
635 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40910083 |
aatctctattaaacaatagccaaaaaccatttaaatctgagatatgtagccattgtttgctcagagagaatgcagttaaatagctactataaatctgagg |
40909984 |
T |
|
| Q |
636 |
taagtaacctttaattctcaaaccaaatgaaagttcctcttgcataagatgtagctgttccaattaaagtttgtgcacatgtatgttaactccaatagca |
735 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40909983 |
taagtaacctttaattctcaaaccaaatgaaagttcctcttgcataagatgtagctgttccaattaaagtttgtgcacatgtatgttaactccaatagca |
40909884 |
T |
|
| Q |
736 |
gtttcctcattctccgcccctaaatgaataaagcagaacaccaaaaattgggacatccttgtaagcaccatctgccttacaaaccagaagcaaattagca |
835 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
40909883 |
gtttccttattctccgcccctaaatgaataaagcagaacaccaaaaatt-ggacatccttgtaag-----------taacaaaccagaagcaaattagca |
40909796 |
T |
|
| Q |
836 |
aaaaacacatatgac--gggggcacaaaaagcagctctcaaaaactcagcaacaaatagtttttgacacacatttagttgatttatattaaataatgata |
933 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40909795 |
aaaaacacatatgacaggggggcacaaaaagcagctctcaaaaactcagcaacaaatagtttttgacacaca-ttagttgatttatattaaataatgata |
40909697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 536 - 609
Target Start/End: Complemental strand, 36465658 - 36465585
Alignment:
| Q |
536 |
aatctctattaaacaatagccaaaaaccatttaaatctgagatatgtagccattgtttgctcagagagaatgca |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
36465658 |
aatctctattaaacaatagccaaaaaccatttaagtctgagacatggagccattgtttgctaagagagaatgca |
36465585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 14009045 - 14008967
Alignment:
| Q |
38 |
ctcctaactaaccatactaaataaattgaaccttaacatacaacactgaggttgctattagtaaatagaactcaaaatat |
117 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||| |||||||| |||||||| |||||||| || ||||||||| |
|
|
| T |
14009045 |
ctcctaactaactatactaaataa-ttgaaccttaacatataacactgaagttgctatcagtaaataaaattcaaaatat |
14008967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 326 - 939
Target Start/End: Complemental strand, 3083546 - 3082925
Alignment:
| Q |
326 |
aaacactactcaagagctaatgttaataaatatagaactaatagaactaaaacttattataatagagtaagtttgagctttccataggcatctgttgctc |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3083546 |
aaacactactcaagagctaatgttaataaatatagaactaatagaactaaaacttattataatagagtaagtttgagctttccataggcatctgttgctc |
3083447 |
T |
|
| Q |
426 |
acaaacacacaaccccttgtgaggagatgataaataaaaaggag--taaattgaaattcaaacaaaggaagaaactcttcaactatcaagttaatttcaa |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3083446 |
acaaacacacaaccccttgtgaggagatgataaataaaaaggagagtaaattgaaatttaaacaaaggaagaaactcttcaactatcaagtcaatttcaa |
3083347 |
T |
|
| Q |
524 |
gtttcagttaataatctctattaaacaatagccaaaaaccatttaaatctgagatatgtagccattgtttgctcagagagaatgcagttaaatagctact |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3083346 |
gtttcagttaataatctctattaaacaatagccaaaaaccatttaaatttgagatatgtagccattgtttgctcagagagaatgcagttaaatagctact |
3083247 |
T |
|
| Q |
624 |
ataaatctgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgcataagatgtagctgttccaattaaagtttgtgcacatgtatgtta |
723 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3083246 |
ataaatctgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgcataagatgtagctgttccaattaaagtttgtgcacatgtatgtta |
3083147 |
T |
|
| Q |
724 |
actccaatagcagtttcctcattctccgcccctaaatgaataaagcagaacaccaaaaattgggacatccttgtaag-----caccatctgccttacaaa |
818 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||| |
|
|
| T |
3083146 |
actccaatagcagtttcctcattctccacccctaaatgaataaagcagaacaccaaaaatt-ggacatccttgtaagtaacaaaccagctgccttacaaa |
3083048 |
T |
|
| Q |
819 |
ccagaagcaaattagcaaaaaacacatatgac---gggggcacaaaaagcagctctcaaaaactcagcaacaaatagtttttgacacacatttagttgat |
915 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
3083047 |
ccagaagcaaattagcaaaaaatacatatgacagggggggcacaaaaagcagctctcaaaaactcagcaacaaatagtttttgacacaca-ttagttaat |
3082949 |
T |
|
| Q |
916 |
ttatattaaataatgatactaatg |
939 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
3082948 |
ttatattaaataatgagactaatg |
3082925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 509 - 898
Target Start/End: Complemental strand, 38404150 - 38403760
Alignment:
| Q |
509 |
tcaagttaatttcaagtttcagttaat------aatctctattaaacaatagccaaaaaccatttaaatctgagatatgtagccattgtttgctcagaga |
602 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
38404150 |
tcaagttaatttcaagttttagttaatttatagaatctctattaaacaatagccaaaaaccatgtaaatatgagacatgtagccattgtttgctcagaga |
38404051 |
T |
|
| Q |
603 |
gaatgcagttaaatagctactataaat-ctgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgcataagatgtagctgttccaatta |
701 |
Q |
| |
|
||||||||| ||||||||||| |||| |||||||||| |||||||||| ||||| | || ||||||| || | |||||||||| | || |||||| |
|
|
| T |
38404050 |
gaatgcagtcaaatagctacttaaaatcctgaggtaagcaacctttaatgctcaacctaagtgaaagtagctgcaacttaagatgtagttattacaatta |
38403951 |
T |
|
| Q |
702 |
aagtttgtgcacatgtatgttaactccaatagcagtttcctcattctccgcccctaaatgaataaagcagaacaccaaaaattgggacatccttgtaag- |
800 |
Q |
| |
|
||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||||||| |
|
|
| T |
38403950 |
aagtttg----------tgttaactccaatggcagtctcctcattctcagcccctaaatgaataaagc---acaccaaaaatt-ggacatcattgtaagt |
38403865 |
T |
|
| Q |
801 |
----caccatctgccttacaaaccagaagcaaattagcaaaaaacacatatgacggggg---cacaaaaagcagctctcaaaaactcagcaacaaatagt |
893 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||||| | ||| |||| |||||||| |||||||||||||||||||| |||| | | |
|
|
| T |
38403864 |
aataaacctgctgccttacaaaccagaagcaaattcgcaaaaaacacacaggacagggggcacacaaaaaacagctctcaaaaactcagcaccaaacatt |
38403765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 139; Significance: 3e-72; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 509 - 898
Target Start/End: Complemental strand, 99740 - 99350
Alignment:
| Q |
509 |
tcaagttaatttcaagtttcagttaat------aatctctattaaacaatagccaaaaaccatttaaatctgagatatgtagccattgtttgctcagaga |
602 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
99740 |
tcaagttaatttcaagttttagttaatttatagaatctctattaaacaatagccaaaaaccatgtaaatatgagacatgtagccattgtttgctcagaga |
99641 |
T |
|
| Q |
603 |
gaatgcagttaaatagctactataaat-ctgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgcataagatgtagctgttccaatta |
701 |
Q |
| |
|
||||||||| ||||||||||| |||| |||||||||| |||||||||| ||||| | || ||||||| || | |||||||||| | || |||||| |
|
|
| T |
99640 |
gaatgcagtcaaatagctacttaaaatcctgaggtaagcaacctttaatgctcaacctaagtgaaagtagctgcaacttaagatgtagttattacaatta |
99541 |
T |
|
| Q |
702 |
aagtttgtgcacatgtatgttaactccaatagcagtttcctcattctccgcccctaaatgaataaagcagaacaccaaaaattgggacatccttgtaag- |
800 |
Q |
| |
|
||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
99540 |
aagtttg----------tgttaactccaatggcagtctcctcattctcagcccctaaatgaataaagc---acaccaaaaatt-ggacatccttgtaagt |
99455 |
T |
|
| Q |
801 |
----caccatctgccttacaaaccagaagcaaattagcaaaaaacacatatgacggggg---cacaaaaagcagctctcaaaaactcagcaacaaatagt |
893 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||||| | ||| |||| |||||||| |||||||||||||||||||| |||| | | |
|
|
| T |
99454 |
aataaacctgctgccttacaaaccagaagcaaattcgcaaaaaacacacaggacagggggcacacaaaaaacagctctcaaaaactcagcaccaaacatt |
99355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 546 - 623
Target Start/End: Original strand, 24469220 - 24469297
Alignment:
| Q |
546 |
aaacaatagccaaaaaccatttaaatctgagatatgtagccattgtttgctcagagagaatgcagttaaatagctact |
623 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
24469220 |
aaacaatagtcaaaaaccatttaaatctgagacatgtagccattgtttgctcagagagaatgtggtcaaatagctact |
24469297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 536 - 620
Target Start/End: Original strand, 37360518 - 37360602
Alignment:
| Q |
536 |
aatctctattaaacaatagccaaaaaccatttaaatctgagatatgtagccattgtttgctcagagagaatgcagttaaatagct |
620 |
Q |
| |
|
|||||||| |||||| || ||| ||||| ||||||||||| ||||| |||||||||||||| ||||| |||||| |||||||| |
|
|
| T |
37360518 |
aatctctactaaacattaaccacaaacctcttaaatctgaggcatgtaaccattgtttgctcaaagagagtgcagtcaaatagct |
37360602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 491 - 535
Target Start/End: Original strand, 6225420 - 6225464
Alignment:
| Q |
491 |
gaagaaactcttcaactatcaagttaatttcaagtttcagttaat |
535 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
6225420 |
gaagaaactcttcaactatcaagttaatttcaattttaagttaat |
6225464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University