View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2225-Insertion-12 (Length: 823)
Name: NF2225-Insertion-12
Description: NF2225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225-Insertion-12 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 349
Target Start/End: Original strand, 32102619 - 32102960
Alignment:
| Q |
8 |
acaaggaagcacatggacgacgagttggtggattagtctctccggcagacaatgattcatagagttctcttagttgctggcttctttgtagagatgcttc |
107 |
Q |
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| T |
32102619 |
acaaggaagcacatggacgacgagttggtggatttgtctctccggcagacaatgattcatagagttctcttagttgctggcttctttgtagagatgcttc |
32102718 |
T |
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| Q |
108 |
ctcagcactaacctccattggttgcactgtctttcgagtcttaattgatccattgtaatatccatcaccccatactagaatcctgtatatcaaatcattg |
207 |
Q |
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| T |
32102719 |
ctcagcactaacctccattggttgcactgtctttcgagtcttaattgatccattgtaatatccatcaccccatactagaatcctgtatatcaaatcattg |
32102818 |
T |
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| Q |
208 |
tgttagagaaaattataaaattctttatcacataagctattactagtaaaagtgaatatgttcgagaagtgtgagttcagtaagagtttgaccttataac |
307 |
Q |
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| T |
32102819 |
tgttagagaaaattataaaattctttatcacataagctattactagtcaaagtgaatatgttcgagaagtgtgagttcagtaagagtttcaccttgtaac |
32102918 |
T |
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| Q |
308 |
tttaacagaaggaggtcaaatgtctttaagaatgactgtaaa |
349 |
Q |
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| T |
32102919 |
tttaatagaaggaggtctaatgtctttaagaatgactgtaaa |
32102960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 399 - 655
Target Start/End: Original strand, 32102991 - 32103249
Alignment:
| Q |
399 |
cgattaataaaatatatacataaacccagagaagttgacacgaactgnnnnnnnnnnnnnggagaatacaactaatatactagaaaaataaccagcggcg |
498 |
Q |
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| T |
32102991 |
cgattaataaaatata--cataaacccagagaagttgaatcgaactgtttttatttttttggagaatacaactaatatactagaaaaataaccagcggcg |
32103088 |
T |
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| Q |
499 |
gtatacatgat----gattttaaattgcagtcacaatacaagtcacctcaacggcttcaaagttgcaatttcaaccgcatcggctgcatttttatgtatt |
594 |
Q |
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| T |
32103089 |
atatacatgatcgatgattttaaattgcagtcacaatacaagtcacctcaacggcatcaaagttgcaatttcaaccgcatcagctgcatttttatgtttt |
32103188 |
T |
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| Q |
595 |
ttttgcaatataaaagtttgcagcgtaactaaaaattgaaattaaaacgatgacatacata |
655 |
Q |
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| T |
32103189 |
ttttgcaatataaaagtttgcagcgtaactaaaaattgaaattaaaacgatgacatacata |
32103249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 679 - 822
Target Start/End: Original strand, 32103263 - 32103391
Alignment:
| Q |
679 |
tatatatacttactcttaattattgggtttgtgccaaaaattgaaacatcaatgatatcatggttcaaaattgcaaaaggcatataaaggtttaacatgt |
778 |
Q |
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| T |
32103263 |
tatatatacacactcttaattattgggtttgtgccaaaaattgaaacatcaa---------------aaattgcaaaaggcatataaaggtttaacatgt |
32103347 |
T |
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| Q |
779 |
ctatgcaacatcacgacctcaatatttacctaaattttgacata |
822 |
Q |
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| T |
32103348 |
ctatgcaacatcacgacctcaataattacctaaattttgacata |
32103391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 623
Target Start/End: Original strand, 56182818 - 56182863
Alignment:
| Q |
579 |
tgcatttttatgtatttttt-gcaatataaaagtttgcagcgtaac |
623 |
Q |
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| T |
56182818 |
tgcattttcatgtatttttccgcaatataaaagtttgcagcgtaac |
56182863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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