View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2225-Insertion-14 (Length: 717)

Name: NF2225-Insertion-14
Description: NF2225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2225-Insertion-14
NF2225-Insertion-14
[»] chr2 (5 HSPs)
chr2 (315-717)||(43522921-43523323)
chr2 (8-251)||(43522614-43522857)
chr2 (521-717)||(5086489-5086685)
chr2 (521-638)||(43904165-43904282)
chr2 (352-449)||(4113276-4113372)
[»] chr7 (5 HSPs)
chr7 (315-717)||(41594317-41594716)
chr7 (8-251)||(41594010-41594253)
chr7 (487-717)||(20707310-20707539)
chr7 (487-717)||(20875354-20875583)
chr7 (318-497)||(42452749-42452925)
[»] chr5 (9 HSPs)
chr5 (315-717)||(14007175-14007567)
chr5 (418-717)||(23123128-23123427)
chr5 (10-251)||(14006881-14007111)
chr5 (321-497)||(23123444-23123620)
chr5 (154-251)||(23123688-23123785)
chr5 (415-497)||(23123396-23123478)
chr5 (28-112)||(23123753-23123836)
chr5 (521-638)||(7295447-7295564)
chr5 (28-60)||(23123876-23123908)
[»] chr8 (3 HSPs)
chr8 (315-591)||(12869185-12869461)
chr8 (8-251)||(12869525-12869768)
chr8 (521-638)||(43340672-43340789)
[»] chr3 (5 HSPs)
chr3 (418-717)||(22511716-22512015)
chr3 (315-497)||(22511984-22512163)
chr3 (106-251)||(22512210-22512355)
chr3 (28-81)||(22512358-22512411)
chr3 (190-246)||(39702798-39702855)
[»] chr1 (1 HSPs)
chr1 (190-251)||(48725121-48725183)
[»] chr4 (1 HSPs)
chr4 (190-246)||(42883957-42884014)


Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 315 - 717
Target Start/End: Original strand, 43522921 - 43523323
Alignment:
Q  315 gaaaacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43522921 gaaaacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctc 43523020  T
Q  415 catctcaacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgttcaaagaattgaagaattgcataacgcgggtga 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43523021 catctcaacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgttcaaagaattgaagaattgcataacgcgggtga 43523120  T
Q  515 ttttttgaattctttagaacgtgatcctggaaagcgttccctaatatggacatttccagcaaatcatgtggatgaaatacgaagagcttatctgaattgg 614  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43523121 ttttttgaattctttagaacgtgatcctggaaagcgttccccaatatggacatttccagcaaatcatgtggatgaaatacgaagagcttatttgaattgg 43523220  T
Q  615 ggtccatatcaaatccatttagaaggatatcctttgtctggtacaggagatcatccaagacggtttaaagacacttggtttagcttatttcattcatggc 714  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  43523221 ggtccatatcaaatccatttagaagaatatcctttgtctggtacaggagatcatccaagacggtttaaagatacttggtttaacttatttcattcatggc 43523320  T
Q  715 tag 717  Q
    |||    
T  43523321 tag 43523323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 43522614 - 43522857
Alignment:
Q  8 cttctcttgttatggcagattggcagtagcaatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagc 107  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43522614 cttctcttgctatggcagattggcagtagcaatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagc 43522713  T
Q  108 aatgtttttctatggtagtagcaacattttgttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43522714 aatgtttttctatggtagtagcaacattttgttcacattttgttcataaatgaatgtttttctatggcagtggcaatgtgccaatgtgttatttgcaatg 43522813  T
Q  208 aatatgttctaattgttttcaattaaacttttgaagcataagtg 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  43522814 aatatgttctaattgttttcaattaaacttttgaagcataagtg 43522857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 521 - 717
Target Start/End: Original strand, 5086489 - 5086685
Alignment:
Q  521 gaattctttagaacgtgatcctggaaagcgttccctaatatggacatttccagcaaatcatgtggatgaaatacgaagagcttatctgaattggggtcca 620  Q
    ||||||||||||||||||||||| |||||||   | ||| |||  || |||| | |||||   ||||| |||||||||||| ||||| || ||||||||     
T  5086489 gaattctttagaacgtgatcctgaaaagcgtattccaatttggcaatatccaccgaatcaaaaggatgcaatacgaagagcgtatctaaaatggggtcct 5086588  T
Q  621 tatcaaatccatttagaaggatatcctttgtctggtacaggagat-catccaagacggtttaaagacacttggtttagcttatttcattcatggctag 717  Q
    |||||||   | ||||||   ||||| |||||||||  || |||  |||||||| |||||| ||||||||||||| ||||| |||| |||||||||||    
T  5086589 tatcaaacgaaattagaaaactatcccttgtctggtg-agcagaaacatccaaggcggtttcaagacacttggttcagcttgtttccttcatggctag 5086685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 521 - 638
Target Start/End: Complemental strand, 43904282 - 43904165
Alignment:
Q  521 gaattctttagaacgtgatcctggaaagcgttccctaatatggacatttccagcaaatcatgtggatgaaatacgaagagcttatctgaattggggtcca 620  Q
    ||||||||||| |||||||||| ||||| ||   ||||| |||  || |||| |||||||  || ||| |||||||||||| ||||| || ||| ||||     
T  43904282 gaattctttaggacgtgatcctagaaagtgtattctaatttggcaatatccaccaaatcaaatgaatgcaatacgaagagcgtatctaaaatggagtcct 43904183  T
Q  621 tatcaaatccatttagaa 638  Q
    |||||||| |||||||||    
T  43904182 tatcaaatgcatttagaa 43904165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 352 - 449
Target Start/End: Original strand, 4113276 - 4113372
Alignment:
Q  352 ttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccatctcaacctattaaagttccaagaattgaagaa 449  Q
    |||||||||||| ||| | || || ||||| ||||||||||||||||||| ||||  ||  | |||| |||||| ||||||||  |||||||||||||    
T  4113276 ttgatcattttt-taaaaggaaagtttgtgggagtgaaagagatgaacaaagaatatcttatacatcacaacctgttaaagttttaagaattgaagaa 4113372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 315 - 717
Target Start/End: Original strand, 41594317 - 41594716
Alignment:
Q  315 gaaaacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctc 414  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41594317 gaaaacagaaaagttaaga---agaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctc 41594413  T
Q  415 catctcaacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgttcaaagaattgaagaattgcataacgcgggtga 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41594414 catctcaacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgttcaaagaattgaagaattgcataacgcgggtga 41594513  T
Q  515 ttttttgaattctttagaacgtgatcctggaaagcgttccctaatatggacatttccagcaaatcatgtggatgaaatacgaagagcttatctgaattgg 614  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41594514 ttttttgaattctttagaacgtgatcctggaaagcgttccccaatatggacatttccagcaaatcatgtggatgaaatacgaagagcttatctgaattgg 41594613  T
Q  615 ggtccatatcaaatccatttagaaggatatcctttgtctggtacaggagatcatccaagacggtttaaagacacttggtttagcttatttcattcatggc 714  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41594614 ggtccatatcaaatccatttagaagaatatcctttgtctggtacaggagatcatccaagacggtttaaagacacttggtttagcttatttcattcatggc 41594713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 41594010 - 41594253
Alignment:
Q  8 cttctcttgttatggcagattggcagtagcaatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41594010 cttctcttgttatggcagattggcagtagcaatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagc 41594109  T
Q  108 aatgtttttctatggtagtagcaacattttgttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41594110 aatgtttttctatggtagtagcaacattttgttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatg 41594209  T
Q  208 aatatgttctaattgttttcaattaaacttttgaagcataagtg 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  41594210 aatatgttctaattgttttcaattaaacttttgaagcataagtg 41594253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 487 - 717
Target Start/End: Original strand, 20707310 - 20707539
Alignment:
Q  487 gaattgaagaattgcataacgcgggtgattttttgaattctttagaacgtgatcctggaaagcgttccctaatatggacatttccagcaaatcatgtgga 586  Q
    ||||||||||| ||||||||   | | ||||| ||||| ||||| |||||||||||||||||||||||| ||||||||||| ||||  |||||||||  |    
T  20707310 gaattgaagaagtgcataaccaagcttattttgtgaatactttaaaacgtgatcctggaaagcgttcccaaatatggacatatccactaaatcatgt-ta 20707408  T
Q  587 tgaaatacgaagagcttatctgaattggggtccatatcaaatccatttagaaggatatcctttgtctggtacaggagatcatccaagacggtttaaagac 686  Q
    | |||||||||||||||||  |||||||||| ||||| ||||   | |||||| ||||| ||||||||||  ||   | ||||||||||||||| |||||    
T  20707409 taaaatacgaagagcttattcgaattggggttcatattaaatatgtatagaagaatatcttttgtctggtggagagaaacatccaagacggtttcaagac 20707508  T
Q  687 acttggtttagcttatttcattcatggctag 717  Q
    |||||||||||| |||||| |||||||||||    
T  20707509 acttggtttagcatatttctttcatggctag 20707539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 487 - 717
Target Start/End: Original strand, 20875354 - 20875583
Alignment:
Q  487 gaattgaagaattgcataacgcgggtgattttttgaattctttagaacgtgatcctggaaagcgttccctaatatggacatttccagcaaatcatgtgga 586  Q
    ||||||||||| ||||||||   | | ||||| ||||| ||||| |||||||||||||||||||||||| ||||||||||| ||||  |||||||||  |    
T  20875354 gaattgaagaagtgcataaccaagcttattttgtgaatactttaaaacgtgatcctggaaagcgttcccaaatatggacatatccactaaatcatgt-ta 20875452  T
Q  587 tgaaatacgaagagcttatctgaattggggtccatatcaaatccatttagaaggatatcctttgtctggtacaggagatcatccaagacggtttaaagac 686  Q
    | |||||||||||||||||  |||||||||| ||||| ||||   | |||||| ||||| ||||||||||  ||   | ||||||||||||||| |||||    
T  20875453 taaaatacgaagagcttattcgaattggggttcatattaaatatgtatagaagaatatcttttgtctggtggagagaaacatccaagacggtttcaagac 20875552  T
Q  687 acttggtttagcttatttcattcatggctag 717  Q
    |||||||||||| |||||| |||||||||||    
T  20875553 acttggtttagcatatttctttcatggctag 20875583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 318 - 497
Target Start/End: Original strand, 42452749 - 42452925
Alignment:
Q  318 aacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccat 417  Q
    ||||||||||||||||   |||||||| |||||||| ||||||||||||||| || |  |||||||||||| |||||||||||||||||||||| |||||    
T  42452749 aacagaaaagttaaga---agaagagtataacacttaatcatttttataagaggaaactttgtgagagtgacagagatgaacaaggaatgactcttccat 42452845  T
Q  418 ctcaacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgttcaaagaattgaagaa 497  Q
    |||| ||| |||||||||  |||||||||||||  ||||||  ||   ||||||||||||||||||||| ||||||||||    
T  42452846 ctcatcctgttaaagttctcagaattgaagaagtgataacttctacatctcaacctgttgatgttcaaaaaattgaagaa 42452925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 315 - 717
Target Start/End: Original strand, 14007175 - 14007567
Alignment:
Q  315 gaaaacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14007175 gaaaacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagtttgtgagagtgaaagagatgaacaaggaatgactcctc 14007274  T
Q  415 catctcaacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgttcaaagaattgaagaattgcataacgcgggtga 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14007275 catctcaacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgttcaaagaattgaagaattgcataacgcgggtga 14007374  T
Q  515 ttttttgaattctttagaacgtgatcctggaaagcgttccctaatatggacatttccagcaaatcatgtggatgaaatacgaagagcttatctgaattgg 614  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14007375 ttttttgaattctttagaacgtgatcctggaaagcgttccccaatatggacatttccagcaaatcatgtggatgaaatacgaagagcttatctaaattgg 14007474  T
Q  615 ggtccatatcaaatccatttagaaggatatcctttgtctggtacaggagatcatccaagacggtttaaagacacttggtttagcttatttcattcatggc 714  Q
    ||||||||||||          ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14007475 ggtccatatcaa----------aagaatatcctttgtctggtacaggagatcatccaagacggtttaaagacacttggtttagcttatttcattcatggc 14007564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 418 - 717
Target Start/End: Complemental strand, 23123427 - 23123128
Alignment:
Q  418 ctcaacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgttcaaagaattgaagaattgcataacgcgggtgattt 517  Q
    |||||||| || | |||||||||||||||||||||||||||||||  ||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  23123427 ctcaacctgttgatgttccaagaattgaagaagacataactcatacaactcaacatgttgatgttcaaaaaattgaagaattgcataacgcgggtgattt 23123328  T
Q  518 tttgaattctttagaacgtgatcctggaaagcgttccctaatatggacatttccagcaaatcatgtggatgaaatacgaagagcttatctgaattggggt 617  Q
    |||||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23123327 tttgaattatttagaacgtgatcttgaaaagcgttccccaatatggacatttccagcaaatcatgtggatgaaatacgaagagcttatctgaattggggt 23123228  T
Q  618 ccatatcaaatccatttagaaggatatcctttgtctggtacaggagatcatccaagacggtttaaagacacttggtttagcttatttcattcatggctag 717  Q
    |||||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  23123227 ccatatcaaatccatttagaagaatatccttcgtctggtaaaggggatcatccaagacggtttaaagacacttggtttagcttgttttattcatggctag 23123128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 14006881 - 14007111
Alignment:
Q  10 tctcttgttatggcagattggcagtagcaatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagcaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14006881 tctcttgttatggcagattggcagtagcaatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagcaa 14006980  T
Q  110 tgtttttctatggtagtagcaacattttgttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaa 209  Q
    |||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14006981 tgtttttctatggtagtagca-----------acattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaa 14007069  T
Q  210 tatgttctaattgttttcaattaaacttttgaagcataagtg 251  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14007070 tatgttctaattgttttcaattaaacttttgaagcataagtg 14007111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 321 - 497
Target Start/End: Complemental strand, 23123620 - 23123444
Alignment:
Q  321 agaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccatctc 420  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23123620 agaaaagttaagaagaagaagagtataacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccatctc 23123521  T
Q  421 aacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgttcaaagaattgaagaa 497  Q
    ||||| |||||||| | | |||||||||||  ||||||  ||   |||||||| ||||||||| ||||||| |||||    
T  23123520 aacctgttaaagtttccataattgaagaagtgataacttctacatctcaacctattgatgttccaagaattaaagaa 23123444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 23123785 - 23123688
Alignment:
Q  154 taaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttttgaagcataagtg 251  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23123785 taaatgaatgtttttatatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgtttccaattaaacttttgaagcataagtg 23123688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 415 - 497
Target Start/End: Complemental strand, 23123478 - 23123396
Alignment:
Q  415 catctcaacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgttcaaagaattgaagaa 497  Q
    |||||||||||||| | |||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  23123478 catctcaacctattgatgttccaagaattaaagaagacataattcatatgactcaacctgttgatgttccaagaattgaagaa 23123396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 23123836 - 23123753
Alignment:
Q  28 tggcagtagcaatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagcaatgt 112  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||  |  ||||||||| |||||||||||||||||    
T  23123836 tggcagtagcaatgttatcacggctcacccacattttgttcatattattggta-aatgaatgtttttatatggcagtagcaatgt 23123753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 521 - 638
Target Start/End: Original strand, 7295447 - 7295564
Alignment:
Q  521 gaattctttagaacgtgatcctggaaagcgttccctaatatggacatttccagcaaatcatgtggatgaaatacgaagagcttatctgaattggggtcca 620  Q
    ||||||||||| | |||||||||||||| ||   ||||| |||  || |||| |||||||  |  ||| |||||||||||| ||||| || ||||||||     
T  7295447 gaattctttaggatgtgatcctggaaagtgtattctaatttggcaatatccaccaaatcaaataaatgcaatacgaagagcgtatctaaaatggggtcct 7295546  T
Q  621 tatcaaatccatttagaa 638  Q
    |||||||| |||||||||    
T  7295547 tatcaaatgcatttagaa 7295564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 23123908 - 23123876
Alignment:
Q  28 tggcagtagcaatgttatcacggcccacccaca 60  Q
    |||||||||||||||||||||||||||||||||    
T  23123908 tggcagtagcaatgttatcacggcccacccaca 23123876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 315 - 591
Target Start/End: Complemental strand, 12869461 - 12869185
Alignment:
Q  315 gaaaacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12869461 gaaaacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctc 12869362  T
Q  415 catctcaacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgttcaaagaattgaagaattgcataacgcgggtga 514  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12869361 catctcaacctattaaagtttcaagaattgaagaagacataactcatatgactcaacctgttgatgttcaaagaattgaagaattgcataacgcgggtga 12869262  T
Q  515 ttttttgaattctttagaacgtgatcctggaaagcgttccctaatatggacatttccagcaaatcatgtggatgaaa 591  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||    
T  12869261 ttttttgaattctttagaacgtgatcctggaaagcgttccccaatacggacatttccagcaaatcatgttgatgaaa 12869185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 12869768 - 12869525
Alignment:
Q  8 cttctcttgttatggcagattggcagtagcaatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12869768 cttctcttgttatggcagattggcagtagcaatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagc 12869669  T
Q  108 aatgtttttctatggtagtagcaacattttgttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12869668 aatgtttttctatggtagtagcaacattttgttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatg 12869569  T
Q  208 aatatgttctaattgttttcaattaaacttttgaagcataagtg 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12869568 aatatgttctaattgttttcaattaaacttttgaagcataagtg 12869525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 521 - 638
Target Start/End: Complemental strand, 43340789 - 43340672
Alignment:
Q  521 gaattctttagaacgtgatcctggaaagcgttccctaatatggacatttccagcaaatcatgtggatgaaatacgaagagcttatctgaattggggtcca 620  Q
    ||||||||||| | |||||||||||||| ||   ||||| |||  || |||| |||||||  |  ||| |||||||||||| ||||| || ||||||||     
T  43340789 gaattctttaggatgtgatcctggaaagtgtattctaatttggtaatatccaccaaatcaaataaatgcaatacgaagagcgtatctaaaatggggtcct 43340690  T
Q  621 tatcaaatccatttagaa 638  Q
    |||||||| |||||||||    
T  43340689 tatcaaatgcatttagaa 43340672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 418 - 717
Target Start/End: Complemental strand, 22512015 - 22511716
Alignment:
Q  418 ctcaacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgttcaaagaattgaagaattgcataacgcgggtgattt 517  Q
    |||||||| || | |||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22512015 ctcaacctgttgatgttccaagaattgaagaagacataactcatacaactcaacctgttgatgtacaaagaattgaagaattgcataacgcgggtgattt 22511916  T
Q  518 tttgaattctttagaacgtgatcctggaaagcgttccctaatatggacatttccagcaaatcatgtggatgaaatacgaagagcttatctgaattggggt 617  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  22511915 tttgaattctttagaacgtgatcctggaaagcgttccccaatatggacatttccagcaaatcatgtggatgaaatatgaagagcttatctaaattggggt 22511816  T
Q  618 ccatatcaaatccatttagaaggatatcctttgtctggtacaggagatcatccaagacggtttaaagacacttggtttagcttatttcattcatggctag 717  Q
    | |||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22511815 ctatatcaaatccatttagaagaatatcatttgtctggtaaaggggatcatccaagacggtttaaagacacttggtttagcttatttcattcatggctag 22511716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 315 - 497
Target Start/End: Complemental strand, 22512163 - 22511984
Alignment:
Q  315 gaaaacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctc 414  Q
    |||||||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512163 gaaaacagaaaagttaagaagaaga---gtataacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctc 22512067  T
Q  415 catctcaacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgttcaaagaattgaagaa 497  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22512066 catctcaacctgttaaagttccatgaattgaagaagacataactcatatgactcaacctgttgatgttccaagaattgaagaa 22511984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 106 - 251
Target Start/End: Complemental strand, 22512355 - 22512210
Alignment:
Q  106 gcaatgtttttctatggtagtagcaacattttgttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22512355 gcaatgtttttctatggtagtagcaacattttgttcacattttgttcataaatgaatgtttttctatggcagtcgcaatgtgccaatgtgttatttgcaa 22512256  T
Q  206 tgaatatgttctaattgttttcaattaaacttttgaagcataagtg 251  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  22512255 tgaatatgttctaattgtttccaattaaacttttgaagcataagtg 22512210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 22512411 - 22512358
Alignment:
Q  28 tggcagtagcaatgttatcacggcccacccacattttgttcatattattggtag 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512411 tggcagtagcaatgttatcacggcccacccacattttgttcatattattggtag 22512358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 39702798 - 39702855
Alignment:
Q  190 aatgtgtt-atttgcaatgaatatgttctaattgttttcaattaaacttttgaagcat 246  Q
    |||||||| ||||||||||||||||||||||| |||| || |||||||||||||||||    
T  39702798 aatgtgttcatttgcaatgaatatgttctaatcgtttccagttaaacttttgaagcat 39702855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 48725183 - 48725121
Alignment:
Q  190 aatgtgtt-atttgcaatgaatatgttctaattgttttcaattaaacttttgaagcataagtg 251  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  48725183 aatgtgttcatttgcaatgaatatgttctaattgtttccaattaaacttttgaagcatcagtg 48725121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 42884014 - 42883957
Alignment:
Q  190 aatgtgtt-atttgcaatgaatatgttctaattgttttcaattaaacttttgaagcat 246  Q
    |||||||| |||| ||||||||||||||||||||||| || |||||||||||||||||    
T  42884014 aatgtgttcattttcaatgaatatgttctaattgtttccagttaaacttttgaagcat 42883957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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