View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2225-Insertion-2 (Length: 1039)
Name: NF2225-Insertion-2
Description: NF2225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 6 - 587
Target Start/End: Original strand, 36462608 - 36463181
Alignment:
| Q |
6 |
catacaacacctagcttgctaatacaccaccacaagcaagcaatcaagagctagatgtcattgaactacaatcaggcaagaaaaaacaaaacactagtaa |
105 |
Q |
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| T |
36462608 |
catacagcacctagcttgctaatacaccaccacaagcaagcaatcaagagctagatgtcattgaactacaatcaggcaagaaaaaacaaaacactagtaa |
36462707 |
T |
|
| Q |
106 |
ttgactgactatatgtgcatcatgctaatcataatcctcc-aacatggtggtataggtagaccctgttacacaatagctatcagtttaaagtaagctgca |
204 |
Q |
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| T |
36462708 |
ttgact----atatgtgcatcatgctaatcataatcctcccaacatggt-----aggtagaccctgttacacaatagctatcagtttaaagtaagctgca |
36462798 |
T |
|
| Q |
205 |
acatcctttatcttcacatgattgaggtctaatgacattcaataacacaccagctttgttgttaacctgctacattctttgcacaccattagaactgatt |
304 |
Q |
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| T |
36462799 |
acgtcctttatcttcacatgattgaggtctaattacattcaataacacaccagctttgttgttaacctgctacattctttgcacaccactataactgatt |
36462898 |
T |
|
| Q |
305 |
gcatatataaccatccaaggcagaaggttcattatttaatactttggcaataaaatcctctcataggtctcagacttttacagctgcatacgcctcgtct |
404 |
Q |
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| T |
36462899 |
gcatatataaccatccaaggcagaaggctcattatttaatactttggcaataaaatcctctcataggtctcagacttttacagctgcatacgcctcgtct |
36462998 |
T |
|
| Q |
405 |
tcacccaaaagctatgacctcttattaaaatcttcctcttacatcaataacaactaatatcaagtgccttccatttgtacatcatactccttaaaccata |
504 |
Q |
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| T |
36462999 |
tcacccaaaagctatgacctcttattaaaatcttcctcttacatcaataacaactaatatcaagtgtcttccatttgtacatcatactccttaaaccata |
36463098 |
T |
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| Q |
505 |
ctggatctcatgccaatttcaatttccaaataactcaatcatgtcaccaaattatatatttagccctttactcacattcgtca |
587 |
Q |
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| T |
36463099 |
ctggatctcatgccaatttcaatttccaaataactcaatcatgtcaccaaattatatatttaaccctttactcacattcgtca |
36463181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 588 - 987
Target Start/End: Original strand, 36463846 - 36464252
Alignment:
| Q |
588 |
gactttacataagagctcgtaaaattgtgggagaacttgaagtcactattaacatgattccaagcttggaacaacttgtttatgaagtcatcatgtctat |
687 |
Q |
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| T |
36463846 |
gactttacataagagctcgtaaaattgtgggagaacttgaagtcactattaacatgattccaagcttggaaaaacttgtttatgaagtcatcatgtctat |
36463945 |
T |
|
| Q |
688 |
gttaaaggagtttagagacagggaaagaaacctatgatccttatgtttgaggttgtgtttatgttcacaaggtaaccaatcaaaaactccaatggaatcg |
787 |
Q |
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| T |
36463946 |
gttaaaggagtttagagacagggaaagaaacctatgatccttatgtttgaggttgtgtttatgttcacaagataaccaatcaaaaactccaatggaatcg |
36464045 |
T |
|
| Q |
788 |
tagtcacttaccaaaataaaactcattattaagctatggaagtatggaagtaaatcatgcgaatcccaagtcat-aaacatcgtatacacgttctgtgtg |
886 |
Q |
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| T |
36464046 |
tagtcaccttccaaaataaaattcattattaagctatggaagtatggaagtaaatcatgcgaat-ccaagtcataaaacatcgtatacacgttctgtgtg |
36464144 |
T |
|
| Q |
887 |
tctggtttggattcc-aaaaaacaagtatcatcctaatgtagcacaaagca-ttttcgag--atcatttggctcagggacaaa--gaaa-gtagagaaaa |
979 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| |||| |||||||||| |
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| T |
36464145 |
tctggtttggattccaaaaaaacaagtatcatcctaatgtagcacaaagcatttttcgaggaatcgtttggctcagggacaaaaggaaaggtagagaaaa |
36464244 |
T |
|
| Q |
980 |
ttgagaaa |
987 |
Q |
| |
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|||||||| |
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|
| T |
36464245 |
ttgagaaa |
36464252 |
T |
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