View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2225-Insertion-20 (Length: 473)

Name: NF2225-Insertion-20
Description: NF2225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2225-Insertion-20
NF2225-Insertion-20
[»] chr4 (7 HSPs)
chr4 (246-435)||(5237095-5237284)
chr4 (246-437)||(5241865-5242056)
chr4 (245-437)||(10635876-10636068)
chr4 (246-437)||(10655262-10655453)
chr4 (246-437)||(10869407-10869598)
chr4 (435-473)||(5237474-5237512)
chr4 (435-473)||(10636256-10636294)
[»] chr6 (3 HSPs)
chr6 (246-437)||(14817323-14817514)
chr6 (246-422)||(14812557-14812733)
chr6 (435-473)||(14812932-14812970)
[»] chr1 (3 HSPs)
chr1 (246-416)||(2357487-2357657)
chr1 (246-416)||(2362082-2362252)
chr1 (435-473)||(2357864-2357902)
[»] chr5 (2 HSPs)
chr5 (64-188)||(33118504-33118628)
chr5 (6-46)||(33118617-33118657)
[»] chr7 (1 HSPs)
chr7 (245-358)||(495249-495362)
[»] scaffold0209 (1 HSPs)
scaffold0209 (325-437)||(27377-27489)
[»] chr8 (3 HSPs)
chr8 (325-437)||(614593-614705)
chr8 (325-437)||(620986-621098)
chr8 (325-437)||(187530-187643)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 246 - 435
Target Start/End: Original strand, 5237095 - 5237284
Alignment:
Q  246 tattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatca 345  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5237095 tattacagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatca 5237194  T
Q  346 ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttt 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5237195 ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttt 5237284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 246 - 437
Target Start/End: Original strand, 5241865 - 5242056
Alignment:
Q  246 tattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatca 345  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5241865 tattacagaatgatattgatgatagcaaaatcacttgaattgttattagttgttggacaagtaacttagcttaggatattgtttctctatagttagatca 5241964  T
Q  346 ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttttg 437  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5241965 ttgtagcttacaatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttttg 5242056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 245 - 437
Target Start/End: Original strand, 10635876 - 10636068
Alignment:
Q  245 ttattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatc 344  Q
    |||||| ||||||||||||||||||| || ||||| ||||||||||||| ||||||||||||||||||  |||||||||||| | |||||||||||||||    
T  10635876 ttattacagaatgatattgatgatagtaatatcacatgaattgttattacttgctggacaagtaactttacttaggatattgatactctatagttagatc 10635975  T
Q  345 attgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttttg 437  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  10635976 attatagcttaccatactattagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatttcattccttttcttttg 10636068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 246 - 437
Target Start/End: Original strand, 10655262 - 10655453
Alignment:
Q  246 tattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatca 345  Q
    ||||| ||||||||||||||||||| || ||||| ||||||||||||| ||||||||||||||||||  |||||||||||| | ||||||||||||||||    
T  10655262 tattacagaatgatattgatgatagtaatatcacatgaattgttattacttgctggacaagtaactttacttaggatattgatactctatagttagatca 10655361  T
Q  346 ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttttg 437  Q
    || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  10655362 ttatagcttaccatactactagttattagtatatatacttattgtaagctctattcttagtaatgagaattcatttcattccttttcttttg 10655453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 246 - 437
Target Start/End: Original strand, 10869407 - 10869598
Alignment:
Q  246 tattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatca 345  Q
    ||||| ||||||||||||||||||| || ||||| ||||||||||||| ||||||||||||||||||  |||||||||||| | ||||||||||||||||    
T  10869407 tattacagaatgatattgatgatagtaatatcacatgaattgttattacttgctggacaagtaactttacttaggatattgatactctatagttagatca 10869506  T
Q  346 ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttttg 437  Q
    || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  10869507 ttatagcttaccatactactagttattagtatatatacttattgtaagctctattcttagtaatgagaattcatttcattccttttcttttg 10869598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 5237474 - 5237512
Alignment:
Q  435 ttgttttgattgattttcttcaatcattgttatactctg 473  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5237474 ttgttttgattgattttcttcaatcattgttatactctg 5237512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 10636256 - 10636294
Alignment:
Q  435 ttgttttgattgattttcttcaatcattgttatactctg 473  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10636256 ttgttttgattgattttcttcaatcattgttatactctg 10636294  T

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Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 246 - 437
Target Start/End: Original strand, 14817323 - 14817514
Alignment:
Q  246 tattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatca 345  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14817323 tattacagaatgatattgatgatagcaaaatcacttgaattgttattagttgttggacaagtaacttagcttaggatattgtttctctatagttagatca 14817422  T
Q  346 ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttttg 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14817423 ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttttg 14817514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 246 - 422
Target Start/End: Original strand, 14812557 - 14812733
Alignment:
Q  246 tattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatca 345  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14812557 tattacagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctttatagttagatca 14812656  T
Q  346 ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatc 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14812657 ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatc 14812733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 14812932 - 14812970
Alignment:
Q  435 ttgttttgattgattttcttcaatcattgttatactctg 473  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14812932 ttgttttgattgattttcttcaatcattgttatactctg 14812970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 246 - 416
Target Start/End: Original strand, 2357487 - 2357657
Alignment:
Q  246 tattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatca 345  Q
    ||||| ||||||||||| |||||||  ||||||||||| ||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||||||||||    
T  2357487 tattacagaatgatattaatgatagtgaaatcacttgatttgttattacttgctggacaagtaactcagcttaggacattgtttctctagagttagatca 2357586  T
Q  346 ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaatt 416  Q
    || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2357587 ttatagcttaccatacttctagttattagtatatatacttgttgtaagctctattctttgtaatgagaatt 2357657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 246 - 416
Target Start/End: Original strand, 2362082 - 2362252
Alignment:
Q  246 tattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatca 345  Q
    ||||| ||||||||||| |||||||  ||||||||||| ||||||||| ||||||||||||||||| ||||||||| |||||||||| | ||||||||||    
T  2362082 tattacagaatgatattaatgatagtgaaatcacttgatttgttattacttgctggacaagtaactcagcttaggacattgtttctccagagttagatca 2362181  T
Q  346 ttgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaatt 416  Q
    || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2362182 ttatagcttaccatacttctagttattagtatatatacttgttgtaagctctattctttgtaatgagaatt 2362252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 2357864 - 2357902
Alignment:
Q  435 ttgttttgattgattttcttcaatcattgttatactctg 473  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2357864 ttgttttgattgattttcttcaatcattgttatactctg 2357902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 33118628 - 33118504
Alignment:
Q  64 aaatttgaaaatttgttatgtggtgatatacatattttggtgggaaaatgtgcatatataatgtaaaaactaacaactataggtgaaagaaagaaaaaag 163  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33118628 aaattttaaaatttgttatgtggtgatatacatattttggtgggaaaatgtgcatatataatgtaaaaactaacaactataggtgaaagaaggaaaaaag 33118529  T
Q  164 gttcaaacatccataagaacatgaa 188  Q
    |||||||||||||||||||||||||    
T  33118528 gttcaaacatccataagaacatgaa 33118504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 33118657 - 33118617
Alignment:
Q  6 cataatatacataataacatcgatttgcaaaattttaaaat 46  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  33118657 cataatatgcataataacatcgatttgcaaaattttaaaat 33118617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 245 - 358
Target Start/End: Original strand, 495249 - 495362
Alignment:
Q  245 ttattatagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagcttaggatattgtttctctatagttagatc 344  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  495249 ttattacagaatgatattgatgatagcaaaatcacttgaattgttattagttgctggacaagtaacttagtttaggatattgtttctctatagttagatc 495348  T
Q  345 attgtagcttacca 358  Q
    ||||||||||||||    
T  495349 attgtagcttacca 495362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 325 - 437
Target Start/End: Original strand, 27377 - 27489
Alignment:
Q  325 tgtttctctatagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcat 424  Q
    |||| |||||||||||||||||| |||||||||||||  || |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  27377 tgttcctctatagttagatcattatagcttaccatacatcttgttattagtatatatacttgttgtaagctctattctaagtaatgagaattcatttcat 27476  T
Q  425 tccctttcttttg 437  Q
    ||| |||| ||||    
T  27477 tccttttcctttg 27489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 325 - 437
Target Start/End: Original strand, 614593 - 614705
Alignment:
Q  325 tgtttctctatagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcat 424  Q
    |||| |||||||||||||||||| |||||||||||||  || |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  614593 tgttcctctatagttagatcattatagcttaccatacatcttgttattagtatatatacttgttgtaagctctattctaagtaatgagaattcatttcat 614692  T
Q  425 tccctttcttttg 437  Q
    ||| |||| ||||    
T  614693 tccttttcctttg 614705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 325 - 437
Target Start/End: Original strand, 620986 - 621098
Alignment:
Q  325 tgtttctctatagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcat 424  Q
    |||| |||||||||||||||||| |||||||||||||  || |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  620986 tgttcctctatagttagatcattatagcttaccatacatcttgttattagtatatatacttgttgtaagctctattctaagtaatgagaattcatttcat 621085  T
Q  425 tccctttcttttg 437  Q
    ||| |||| ||||    
T  621086 tccttttcctttg 621098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 437
Target Start/End: Original strand, 187530 - 187643
Alignment:
Q  325 tgtttctctatagttagatcattgtagcttaccatactactagttattag--tatatatacttgttgtaagctctattcttagtaatgagaattcatatc 422  Q
    |||| |||||||| ||||||||| || |||  |||||  || ||||||||  |||||||||| ||||||||||||||||| |||||||| ||||||| ||    
T  187530 tgttcctctataggtagatcattataacttctcatacatcttgttattagcatatatatact-gttgtaagctctattctaagtaatgataattcatttc 187628  T
Q  423 attccctttcttttg 437  Q
    ||||| |||| ||||    
T  187629 attccttttcctttg 187643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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