View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2225-Insertion-21 (Length: 459)
Name: NF2225-Insertion-21
Description: NF2225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225-Insertion-21 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 8403312 - 8403006
Alignment:
| Q |
10 |
tctcttccagttgttttctctgtgcatagatatgtcacacctgattgacctcttccgagttctttcttcatatcgtatatattgttaatcactacgtatg |
109 |
Q |
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| T |
8403312 |
tctcttccagttgttttctctgtgcatagatatgtcacacctgattgacctcttccgagttctttcttcatatcgtatatattgttaatcactacgtatg |
8403213 |
T |
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| Q |
110 |
gtttacctaaaattgcacctatttgtggattactagaagaagatggagattttgtggttttgggaggtggatcaaaacttgtttgattgtagccatagcc |
209 |
Q |
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| T |
8403212 |
gtttacctaaaattgcacctatttgtggattactagaagaagatggagattttgtggttttgggagatggatcaaaacttggttgattgtagccatagcc |
8403113 |
T |
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| Q |
210 |
agagctatgcctgggagaggactccgaagaggagacaatgggaatgtctcggttagtagtacaacagaaaaacgccttaaacaatcctaatcccattctc |
309 |
Q |
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| T |
8403112 |
agagctatgcctgggagaggactccgaagaggagacaatgggaatgtctcggtttgtagtacaacagaaaaacgccttaaacaatcctaatcccattctc |
8403013 |
T |
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| Q |
310 |
taattac |
316 |
Q |
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| T |
8403012 |
taattac |
8403006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 346 - 446
Target Start/End: Complemental strand, 8402993 - 8402893
Alignment:
| Q |
346 |
agttgctttcccatttaacatatgtttccaaacctatatatacatgcatgaatttacattttgagtttttagtatgaatgattcattggtactatttcac |
445 |
Q |
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| T |
8402993 |
agttgctttcccatttaacatatgtttccaaacctatatatacatgcatgaatttacattttgagtttttagtatgaatgattcattggtactatttcac |
8402894 |
T |
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| Q |
446 |
a |
446 |
Q |
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| T |
8402893 |
a |
8402893 |
T |
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