View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2225-Insertion-23 (Length: 387)
Name: NF2225-Insertion-23
Description: NF2225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225-Insertion-23 |
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| [»] chr5 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 153 - 387
Target Start/End: Complemental strand, 2368651 - 2368417
Alignment:
| Q |
153 |
gcagaacagataaactggtttggaattatgtgagtactcttatatctatactatttattatagcatgaaaactctcagcttcaagcttataattaagtat |
252 |
Q |
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| T |
2368651 |
gcagaatagataaactggtttggaattctgtgagtactcttatatctatactatttattatagcgtgaaaactctcagcttcaggcttataattaagtat |
2368552 |
T |
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| Q |
253 |
ctaactcagccttaggtatctactaaaaaaggctccaattgacatatggtgcagagtaaaggattgatgattaagagggtatctgcgaatgtttgcttag |
352 |
Q |
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| T |
2368551 |
ctaactcagccttaggtatctactaaaaaatgctccaattgacatatggcgcagagtaaaggattgatgattaagagggtatctgtgaaagtttgcttag |
2368452 |
T |
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| Q |
353 |
gctcaatttatgtgtgacataaacagttctggtag |
387 |
Q |
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| T |
2368451 |
gctcaatttatgtgtgacataaacagttctggtag |
2368417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 2368796 - 2368719
Alignment:
| Q |
8 |
tgtctttctctcggcgtacagattttccgtaccaaatcatcccaacagttagttcaatttatcatcatcactattata |
85 |
Q |
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| T |
2368796 |
tgtctttctttcggcgtacagactttccgtaccaaatcatcccaacagttagttcaatttatcatcatcactattata |
2368719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 181 - 387
Target Start/End: Complemental strand, 42302397 - 42302192
Alignment:
| Q |
181 |
tgtgagtactcttatatctatactatttattatagcatgaaaactctcagcttcaagcttataattaagtatctaactcagccttaggtatctactaaaa |
280 |
Q |
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| T |
42302397 |
tgtgagtactcttacatctatactatttattatagcgtgaaaactcttagtttcaggcttataattaagtatctaactcagccttaggtatctact-aaa |
42302299 |
T |
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| Q |
281 |
aaggctccaattgacatatggtgcagagtaaaggattgatgattaagagggtatctgcgaatgtttgcttaggctcaatttatgtgtgacataaacagtt |
380 |
Q |
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| T |
42302298 |
gatgctccaattgacatattgttcagagtaaaggattgatgattaagagggtatctatgaaagtttgtttaggctcaatttatgtgtgacgtaaacagtt |
42302199 |
T |
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| Q |
381 |
ctggtag |
387 |
Q |
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| T |
42302198 |
ctggtag |
42302192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 42302576 - 42302499
Alignment:
| Q |
8 |
tgtctttctctcggcgtacagattttccgtaccaaatcatcccaacagttagttcaatttatcatcatcactattata |
85 |
Q |
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| T |
42302576 |
tgtctttctctcggcgtacagactttccgtaccaaatcatcccaacagttagttcaattcatcatcatcactattata |
42302499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 160 - 304
Target Start/End: Complemental strand, 14208069 - 14207929
Alignment:
| Q |
160 |
agataaactggtttggaattatgtgagtactcttatatctatactatttattatagcatgaaaactctcagcttcaagcttataattaagtatctaactc |
259 |
Q |
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| T |
14208069 |
agataaactggtttggaattctgtgagtactcttatatctatactgcttattatagcgtgaaaactctcagcttcaggcttatag----gtatctaactc |
14207974 |
T |
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| Q |
260 |
agccttaggtatctactaaaaaaggctccaattgacatatggtgc |
304 |
Q |
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| T |
14207973 |
agccttaggtatctactaaaaaatgctccaattgacatatggtgc |
14207929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 14208181 - 14208143
Alignment:
| Q |
47 |
tcccaacagttagttcaatttatcatcatcactattata |
85 |
Q |
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| T |
14208181 |
tcccaagagttagttcaattcatcatcatcactattata |
14208143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 1343385 - 1343348
Alignment:
| Q |
11 |
ctttctctcggcgtacagattttccgtaccaaatcatc |
48 |
Q |
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| T |
1343385 |
ctttctctcggcgaacagactttccgtaccaaatcatc |
1343348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 382
Target Start/End: Complemental strand, 6794369 - 6794340
Alignment:
| Q |
353 |
gctcaatttatgtgtgacataaacagttct |
382 |
Q |
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| T |
6794369 |
gctcaatttatgtgtgacataaacagttct |
6794340 |
T |
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