View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2225-Insertion-32 (Length: 120)
Name: NF2225-Insertion-32
Description: NF2225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225-Insertion-32 |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 4e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 4e-45
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 42951210 - 42951301
Alignment:
| Q |
11 |
gcaatactggttagataaataaatttctgagttagttttgttttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaa |
102 |
Q |
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| T |
42951210 |
gcaatactggttagataaataaatttctgagttagttttgttttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaa |
42951301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 8e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 8e-34
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 2852846 - 2852930
Alignment:
| Q |
18 |
tggttagataaataaatttctgagttagttttgttttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaa |
102 |
Q |
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| T |
2852846 |
tggttagagaaataaatttctgtgttagttttgttttttaagtaatcaatgtacaactcctccaaaagtaatcatgtacaatgaa |
2852930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 8e-34
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 2904878 - 2904962
Alignment:
| Q |
18 |
tggttagataaataaatttctgagttagttttgttttttaagtaatcaatgtacaactcctcaaaaagtaatcatgtacaatgaa |
102 |
Q |
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| T |
2904878 |
tggttagagaaataaatttctgtgttagttttgttttttaagtaatcaatgtacaactcctccaaaagtaatcatgtacaatgaa |
2904962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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