View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2225-Insertion-9 (Length: 947)

Name: NF2225-Insertion-9
Description: NF2225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2225-Insertion-9
NF2225-Insertion-9
[»] chr8 (6 HSPs)
chr8 (340-941)||(4903301-4903904)
chr8 (57-340)||(9336312-9336593)
chr8 (722-881)||(1557161-1557320)
chr8 (7-52)||(9336584-9336629)
chr8 (361-468)||(1556798-1556905)
chr8 (548-615)||(1556987-1557054)
[»] chr7 (3 HSPs)
chr7 (340-941)||(22153653-22154235)
chr7 (340-941)||(22209568-22210150)
chr7 (747-796)||(41450779-41450828)
[»] chr4 (4 HSPs)
chr4 (408-896)||(53561813-53562303)
chr4 (409-609)||(34821645-34821847)
chr4 (714-793)||(38185505-38185584)
chr4 (716-896)||(34821358-34821538)


Alignment Details
Target: chr8 (Bit Score: 553; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 340 - 941
Target Start/End: Original strand, 4903301 - 4903904
Alignment:
340 ttacttcttcatgatttgctcgaggatttgaatgggtttgtcttgggcgaggagggggatgattggatttggaggttggaagaggaaggtgctttttcgg 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
4903301 ttacttcttcatgatttgctcgaggatttgaatgggtttgtcttgggcgaggagggggatgattggatttggaggttggatgaggaaggtgctttttcgg 4903400  T
440 taaaatcaatgtattctaaattggaaacattgatgataagggaggaaggtcttgatggtctcccgaggagggttttctcgcatatttggaagagcccggc 539  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
4903401 taaaatcaatgtattctaaattggaaacattgatgataagggaggaagatcttgatggtctcccgaggaaggttttctcgcatatttggaagagcccggc 4903500  T
540 --cgtcgaaagtggtggtttttacttggaaacttcttcatgatagaatcccaacaaagatcaaccttgctataagaaactcgctcccaccggatagctct 637  Q
      ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4903501 accgtcgaaagtggtggtttttacttggaaacttcttcacgatagaatcccaacaaagatcaaccttgctataagaaactcgctcccaccggatagctct 4903600  T
638 ctacagtgtgtttggtgcaataattcgattgaagattcatcacatctttttcttcattgcgaaggggttggtaaggtctggagtaagcttatggagtggt 737  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
4903601 ctacagtgtgtttggtgcaataattcgattgaagattcaacacatatttttcttcattgcgaaggggttggtaaggtctggtgtaagcttatggagtggt 4903700  T
738 tggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaat 837  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
4903701 tggaatttaattttttaattcctcctaatctgtttattatgtggcaatgttggaatggtgagtttttgaacaaaaagctgcgcaggggtggtagattaat 4903800  T
838 ttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtg 937  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
4903801 ttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagctgttggaatctgttaaggtg 4903900  T
938 ttgt 941  Q
    ||||    
4903901 ttgt 4903904  T

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Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 57 - 340
Target Start/End: Complemental strand, 9336593 - 9336312
Alignment:
57 aaagactgtgacaaggaatatcacatgaagagaaagccaacacagtcccaaccacatatatatacagccacaagaacattaatcagaagagtgaagacca 156  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
9336593 aaagactgtgacaaggaatatcacacgaagagaaagccaagacagtcccaaccacatatata--cagccacaagaacattaatcagaagagtgaagacca 9336496  T
157 aaaccagctggacaacaatgttgatgaacgagttacttgtactcactctcattttcgatatgatctattattaatctttgcagttcaaggnnnnnnngaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
9336495 aaaccagctggacaacaatgttgatgaacgagttacttgtactcactctcattttcgatatgatctattattaatctttgcagttcaaggaaaaaaagaa 9336396  T
257 tgttcctgaataaatgatcgcatatatcctaaccaaatatccctcaataatgaatacatgacacgtatacttataccagggact 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||    
9336395 tgttcctgaataaatgatcgcatatatcctaaccaaatatccctcaacaatgaatacatgacacatatacttataccagagact 9336312  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 722 - 881
Target Start/End: Original strand, 1557161 - 1557320
Alignment:
722 aagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagctgcgca 821  Q
    ||||||||||| ||| |||| |||||||||||||| || || |||||||||||||||||||||||||||| ||| |   || | ||||||||| | || |    
1557161 aagcttatggactggctggactttaattttttaatccccccaaatctgtttattatgtgggaatgttggattggagctgttgtcaataaaaagattcgga 1557260  T
822 ggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgaca 881  Q
     |||||  ||  | |||||||||||  | |||||||  ||||||||||| ||||||||||    
1557261 agggtgtgaggcttatttggcatgccaccatttggaacatttggaaagcaaggaatgaca 1557320  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 9336629 - 9336584
Alignment:
7 agttagaactttgaatctgttaggtcattttctcaaaaagactgtg 52  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
9336629 agttagaactttgaatctggtaggtcattttctcaaaaagactgtg 9336584  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 361 - 468
Target Start/End: Original strand, 1556798 - 1556905
Alignment:
361 gaggatttgaatgggtttgtcttgggcgaggagggggatgattggatttggaggttggaagaggaaggtgctttttcggtaaaatcaatgtattctaaat 460  Q
    |||||||||||||| ||||  || |  || |||| |||| ||||||  ||||||||||| ||||| || ||||| ||||| |||||||||||||| ||||    
1556798 gaggatttgaatggttttggttttgtggaagaggaggatcattggaagtggaggttggaggaggacggagctttctcggtcaaatcaatgtattcaaaat 1556897  T
461 tggaaaca 468  Q
    ||||||||    
1556898 tggaaaca 1556905  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 548 - 615
Target Start/End: Original strand, 1556987 - 1557054
Alignment:
548 gtggtggtttttacttggaaacttcttcatgatagaatcccaacaaagatcaaccttgctataagaaa 615  Q
    |||||||||||| ||||||||||||| || |||||||| || ||||||| ||||||||| || |||||    
1556987 gtggtggttttttcttggaaacttctccacgatagaattcctacaaagaccaaccttgcaattagaaa 1557054  T

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Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 340 - 941
Target Start/End: Complemental strand, 22154235 - 22153653
Alignment:
340 ttacttcttcatgatttgctcgaggatttgaatgggtttgtcttgggcgaggagggggatgattggatttggaggttggaagaggaaggtgctttttcgg 439  Q
    ||||||||||| |||||| | || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||      
22154235 ttacttcttcacgatttgttagaagatttgaatgggtttgtgttgggcgaggagggggatgattggatttggaggttggatgaggaaggtgctttgtcaa 22154136  T
440 taaaatcaatgtattctaaattggaaacattgatgataagggaggaaggtcttgatggtctcccgaggagggttttctcgcatatttggaagagcccggc 539  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||| |||||||||||||||||||||||    
22154135 taaaataaatttattctaaattggaaacattgatgataagggaggatggtcttgatggtctcccgacgaaggttttttcgcatatttggaagagcccggc 22154036  T
540 --cgtcgaaagtggtggtttttacttggaaacttcttcatgatagaatcccaacaaagatcaaccttgctataagaaactcgctcccaccggatagctct 637  Q
      ||||| ||||| |||||||||                     ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
22154035 accgtcggaagtgatggttttta---------------------gaatcccaacaaagatcaaccttgctataaggaactcgctcccaccggatagctct 22153957  T
638 ctacagtgtgtttggtgcaataattcgattgaagattcatcacatctttttcttcattgcgaaggggttggtaaggtctggagtaagcttatggagtggt 737  Q
    || ||||||||||||||||| ||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
22153956 cttcagtgtgtttggtgcaacaattcgattaaagatttaacacatctttttcttcattgcgaaggggttggtaaggtctggtgtaagcttatggagtggt 22153857  T
738 tggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaat 837  Q
    ||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
22153856 tggaatttaattttttaatccctcttaatctgtttattatgcgggaatgttggaatggtgagtttttgaacaaaaagctgcgctggggtggtagattaat 22153757  T
838 ttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtg 937  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||    
22153756 ttggcatgccgcaatttggagtatttggaaagcgaggaatgacataattttcaacaatattgtgacagatgtggagaagctgttggaatcttttaaggtg 22153657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 340 - 941
Target Start/End: Complemental strand, 22210150 - 22209568
Alignment:
340 ttacttcttcatgatttgctcgaggatttgaatgggtttgtcttgggcgaggagggggatgattggatttggaggttggaagaggaaggtgctttttcgg 439  Q
    ||||||||||| |||||| | || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||      
22210150 ttacttcttcacgatttgttagaagatttgaatgggtttgtgttgggcgaggagggggatgattggatttggaggttggatgaggaaggtgctttgtcaa 22210051  T
440 taaaatcaatgtattctaaattggaaacattgatgataagggaggaaggtcttgatggtctcccgaggagggttttctcgcatatttggaagagcccggc 539  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||| |||||||||||||||||||||||    
22210050 taaaataaatttattctaaattggaaacattgatgataagggaggatggtcttgatggtctcccgacgaaggttttttcgcatatttggaagagcccggc 22209951  T
540 --cgtcgaaagtggtggtttttacttggaaacttcttcatgatagaatcccaacaaagatcaaccttgctataagaaactcgctcccaccggatagctct 637  Q
      ||||| ||||| |||||||||                     ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
22209950 accgtcggaagtgatggttttta---------------------gaatcccaacaaagatcaaccttgctataaggaactcgctcccaccggatagctct 22209872  T
638 ctacagtgtgtttggtgcaataattcgattgaagattcatcacatctttttcttcattgcgaaggggttggtaaggtctggagtaagcttatggagtggt 737  Q
    || ||||||||||||||||| ||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
22209871 cttcagtgtgtttggtgcaacaattcgattaaagatttaacacatctttttcttcattgcgaaggggttggtaaggtctggtgtaagcttatggagtggt 22209772  T
738 tggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaat 837  Q
    ||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
22209771 tggaatttaattttttaatccctcttaatctgtttattatgcgggaatgttggaatggtgagtttttgaacaaaaagctgcgctggggtggtagattaat 22209672  T
838 ttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtg 937  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||    
22209671 ttggcatgccgcaatttggagtatttggaaagcgaggaatgacataattttcaacaatattgtgacagatgtggagaagctgttggaatcttttaaggtg 22209572  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 747 - 796
Target Start/End: Original strand, 41450779 - 41450828
Alignment:
747 attttttaattcctcctaatctgtttattatgtgggaatgttggaatggt 796  Q
    |||||||||||||||| ||| |||||||| | ||| ||||||||||||||    
41450779 attttttaattcctccaaatttgtttattctttggcaatgttggaatggt 41450828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 5e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 408 - 896
Target Start/End: Original strand, 53561813 - 53562303
Alignment:
408 ttggaggttggaagaggaaggtgctttttcggtaaaatcaatgtattctaaattggaaacattgatgataagggaggaaggtcttgatggtctcccgagg 507  Q
    |||||| ||||||||||| ||| |||||||||| ||||| |||||||| |||||||||||||||||| | ||||| ||  | |||||||  ||   ||||    
53561813 ttggagtttggaagaggacggtactttttcggttaaatctatgtattccaaattggaaacattgatggtgagggaagagagccttgatgaactagagagg 53561912  T
508 agggttttctcgcatatttggaagagcccg--gccgtcgaaagtggtggtttttacttggaaacttcttcatgatagaatcccaacaaagatcaaccttg 605  Q
    ||||| ||   ||||||||||||||| |||  |||||| || || || || ||  | |||||||| || ||||||||||| || || ||||| || || |    
53561913 agggtgtttaagcatatttggaagagtccggcgccgtccaaggtcgttgtcttctcgtggaaactcctccatgatagaattcctacgaagattaatctag 53562012  T
606 ctataagaaactcgctcccaccggatagctctctacagtgtgtttggtgcaataattcgattgaagattcatcacatctttttcttcattgcgaaggggt 705  Q
    |||| || || |   ||||||||||||  |||    ||||||| ||||| |||||  ||  ||||||| |  | ||| | ||||||||||| ||||||||    
53562013 ctattaggaattgtttcccaccggatacatcttatgagtgtgtgtggtgtaataacacggctgaagatgctactcatttatttcttcattgtgaaggggt 53562112  T
706 tggtaaggtctggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttg 805  Q
          ||| ||| ||||| | ||||| |||||||| ||||||||| ||||||| || ||||| |||||| ||||||||||||||||||| |   ||||     
53562113 gaaggtggtttggtgtaagatcatggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgtttta 53562212  T
806 aataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatg 896  Q
    ||||| |||   || |  |||| |||| | |||||||||||||  ||||||||||| |||||||||||||| |||||||||||||| ||||    
53562213 aataataagacccgtaaaggtgttagaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatg 53562303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 409 - 609
Target Start/End: Complemental strand, 34821847 - 34821645
Alignment:
409 tggaggttggaagaggaaggtgctttttcggtaaaatcaatgtattctaaattggaaacattgatgataagggaggaaggtcttgatggtctcccgagga 508  Q
    ||||||||||| ||||| || || ||||||||||||||||||||||||| |||||||||||||||| |   ||  ||   |||| | | |     |||||    
34821847 tggaggttggaggaggatggggccttttcggtaaaatcaatgtattctagattggaaacattgatggtgccggttgacaatcttcaagatggggagagga 34821748  T
509 gggttttctcgcatatttggaagagcccggc--cgtcgaaagtggtggtttttacttggaaacttcttcatgatagaatcccaacaaagatcaaccttgc 606  Q
    |||| ||  |||| ||| |||||||  ||||  | || |||||||| || ||| |||||||||||||||||||||||||||||||||| |||||||||||    
34821747 gggtgtttgcgcaaattcggaagagttcggctccatctaaagtggtcgtctttgcttggaaacttcttcatgatagaatcccaacaaaaatcaaccttgc 34821648  T
607 tat 609  Q
    |||    
34821647 tat 34821645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 714 - 793
Target Start/End: Complemental strand, 38185584 - 38185505
Alignment:
714 tctggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaat 793  Q
    ||||| || |||||||||||||| ||||||| |||||| ||||||| || ||||||||||| | ||||||||||||||||    
38185584 tctggcgtgagcttatggagtggctggaattcaattttataattccaccgaatctgtttatcacgtgggaatgttggaat 38185505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 716 - 896
Target Start/End: Complemental strand, 34821538 - 34821358
Alignment:
716 tggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagc 815  Q
    ||||||||||| ||||||||||| ||  ||||| || |||| ||||| ||| ||||||| |||||| | ||||||||||||| | ||   |||||||||     
34821538 tggagtaagctcatggagtggttagacattaatattataatccctccgaatttgtttatcatgtggaattgttggaatggtgcggttcacaataaaaaga 34821439  T
816 tgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatg 896  Q
    | || | ||| |  ||  | |||||||| || || |||||||| || ||||||||||||||||| |  ||||| |||||||    
34821438 ttcgtaagggagtgaggcttatttggcacgccgcgatttggagcatatggaaagcgaggaatgatattatttttaacaatg 34821358  T

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