View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2225_high_1 (Length: 457)
Name: NF2225_high_1
Description: NF2225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 17627478 - 17627667
Alignment:
| Q |
4 |
ttcttgatattatttgttgtgttgtatacatgtttgtaatataatttattgattctaaactttaatttcatgaaaataaattcatatctttaattgaaaa |
103 |
Q |
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| T |
17627478 |
ttcttgatattatttgttgtgttgtatacatgtttgtgatataatttattgattctaaactttaaatacatgaaaatgaattcaaatctttaattgaaaa |
17627577 |
T |
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| Q |
104 |
tatacaacctttaattt---tcatcatgtcgttgttatgttcttcagatccaaaaatccattcttttctgctcaaaatttatatgtattt |
190 |
Q |
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| T |
17627578 |
tatacaacctttaactttcatcatcatgtcgttgttctgttcttccgatccaaaaattcattcttttctgctcaaaatttatatgtattt |
17627667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 178 - 355
Target Start/End: Original strand, 17633716 - 17633892
Alignment:
| Q |
178 |
tttatatgtatttgtcacttcatatgctaaggaattatttacttacctcaatcgtcatgctcaaagcaataggaaaaattgataatggtctagaaggatt |
277 |
Q |
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| T |
17633716 |
tttatatgtatttgtcacttcatatgctaaggaattatttacttacctcaactgtcatgctcaaagcaataggaaaaattgataaaggtctagaagaatt |
17633815 |
T |
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| Q |
278 |
tttcttaatactttttgctcactaatcccaaatgatttacacttgcctctaatatatagatagattcattggtttcac |
355 |
Q |
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| T |
17633816 |
tttcttaattctttttgctcactaat-ccaaatgatttatacttgcctctcatatatagatatattcactggtttcac |
17633892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 371 - 438
Target Start/End: Original strand, 17633870 - 17633936
Alignment:
| Q |
371 |
atagatagattcactagtttcactgtttgattttattttaagagtcattcccgaaatgtggctggcat |
438 |
Q |
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| T |
17633870 |
atagatatattcactggtttcactgtttgatttt-ttttgagagtcattcccgaaatgtggctggcat |
17633936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 70 - 300
Target Start/End: Original strand, 27545027 - 27545259
Alignment:
| Q |
70 |
ttcatgaaaataaattcatatctttaattgaaaatat--acaacctttaattt--tcatcatgtcgttgttatgttcttcagatccaaaaa--tccattc |
163 |
Q |
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| T |
27545027 |
ttcatgaaaataaattcaaa-ctttaattgaaaatattaagaactttaaatttcatcatcatatgtttgttttattcttctgatccaaaaaaattccttc |
27545125 |
T |
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| Q |
164 |
ttttctgctcaaaatttatatgtatttgtcacttcatatgctaaggaattatttacttacctcaatcgtcatgctcaaagcaataggaaaaattgataat |
263 |
Q |
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| T |
27545126 |
ttttctgttcaagattta-at-tctttatcacttcacatgctaggga-ttatttactcacctcaatagtcatgctcaaagcaataggaaaaattgataaa |
27545222 |
T |
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| Q |
264 |
ggtctagaaggatttttcttaatactttttgctcact |
300 |
Q |
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| T |
27545223 |
agtctagaaagatttttcttaatactttttgctcact |
27545259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 82 - 296
Target Start/End: Complemental strand, 18642647 - 18642424
Alignment:
| Q |
82 |
aattcatatctttaattgaaaatatacaacctttaattttcatcatgtc---gttgttatgttcttcagatccaaaaatccattcttttctgctcaaaat |
178 |
Q |
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| T |
18642647 |
aattcatat-tttaattgaaaatatatgaccttcaaatttcatcatcacatggttgttctgttcttccgatccaaaaattcattcttttctgctcaatat |
18642549 |
T |
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| Q |
179 |
ttatatgtatt---tgtcacttcatatgctaaggaattatttacttacctcaatcgtcatgctcaaagcaataggaaaaattgataatggtct----aga |
271 |
Q |
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| T |
18642548 |
ttatatgttttctttatcacttcacatgctaagggattattcactcacctcaagagtcatgctcaaagcaatagaaaaaattgataaaagtctaaaaaga |
18642449 |
T |
|
| Q |
272 |
aggatttttcttaatactttttgct |
296 |
Q |
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| T |
18642448 |
ttgatttttcttaaaactttttgct |
18642424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 18642415 - 18642386
Alignment:
| Q |
325 |
tctaatatatagatagattcattggtttca |
354 |
Q |
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| T |
18642415 |
tctaatatatagatagattcattggtttca |
18642386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 21697422 - 21697315
Alignment:
| Q |
20 |
ttgtgttgtatacatgtttgtaatataatttattgattctaaactttaatttcatgaaaataaattcatatctttaattgaaaatatacaacctttaatt |
119 |
Q |
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||||||||||||| |||||| |||||||||||| |||| |||||| || ||||| ||| || | |||||| |||||||||| ||| |||||| | | |
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| T |
21697422 |
ttgtgttgtatactcatttgtatcataatttattgactctagactttacttccatgacaatgaacttctatcttaaattgaaaatttaccacctttgagt |
21697323 |
T |
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| Q |
120 |
ttcatcat |
127 |
Q |
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|||||||| |
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| T |
21697322 |
ttcatcat |
21697315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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