View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2225_high_8 (Length: 238)
Name: NF2225_high_8
Description: NF2225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2099037 - 2099257
Alignment:
| Q |
1 |
tgaaaatgttgaaggaacataacactgaagctgatgctcaagcaaatcgggccatctttctcggaggttagaccttaataaatttcttagatccctacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2099037 |
tgaaaatgttgaaggaacataacactgaagctgatgctcaagcaaatcgggccatctttctcggaggttagaccttaagaaatttcttagatccctacaa |
2099136 |
T |
|
| Q |
101 |
gtttcaattgtttgattctttgatttcttaataaacaagaattgcaatgacttggagccaaagctgctttgaaatcaaaaagcatattttagtttgatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2099137 |
gtttcaattgtttgattctttgatttcttaataaacaagaattgcaatgacttggagccaaagctgctttgaaatcaaaaagcatattttagtttgatta |
2099236 |
T |
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| Q |
201 |
tttgatttcctagtatatcag |
221 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
2099237 |
tttaatttcctagtatatcag |
2099257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 2107195 - 2107367
Alignment:
| Q |
1 |
tgaaaatgttgaaggaacataacactgaagctgatgctcaagcaaatcgggccatctttctcggaggttagaccttaataaatttcttagatccctacaa |
100 |
Q |
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|||||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| | |||||||| |||||| | |
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| T |
2107195 |
tgaaaatgtttaaggaatataacgctgaagctgatgcacaagcaaatcgggccatctttcttggaggttagaccttaagacttttcttag-tccctatag |
2107293 |
T |
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| Q |
101 |
gtttcaattgtttgattctttgatttcttaataaacaagaattgcaatgacttggagccaaagctgctttgaaa |
174 |
Q |
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| T |
2107294 |
gttacaaatgttcaattgtttgatttcctaatgaacaagaactgcaatgacttgcatccaaagctgctttgaaa |
2107367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 2088870 - 2088990
Alignment:
| Q |
7 |
tgttgaaggaacataacactgaagctgatgctcaagcaaatcgggccatctttctcggaggttagaccttaataaatttcttagatccctacaagtttca |
106 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||| | |||| ||| |||||||||| |||||| || | ||||| || ||| || |||||||| |
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| T |
2088870 |
tgtttaaggaacttaacactgaagctgatgctcaagcaaaccaggccgtctatctcggaggtgagacctcaagacttttctcagctccgtataagtttca |
2088969 |
T |
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| Q |
107 |
attgtttgattctttgatttc |
127 |
Q |
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||||||| |||||||||||| |
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| T |
2088970 |
tttgtttgtttctttgatttc |
2088990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 2048934 - 2048987
Alignment:
| Q |
20 |
taacactgaagctgatgctcaagcaaatcgggccatctttctcggaggttagac |
73 |
Q |
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||||||||||||||||||||||||||| |||||||| | |||| |||||||||| |
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| T |
2048934 |
taacactgaagctgatgctcaagcaaaccgggccatttatctccgaggttagac |
2048987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 2042399 - 2042468
Alignment:
| Q |
6 |
atgttgaaggaacataacactgaagctgatgctcaagcaaatcgggccatctttctcggaggttagacct |
75 |
Q |
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||||| |||||| ||||| ||| ||||||||||||||||||||||| ||| |||| |||||||||||| |
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| T |
2042399 |
atgtttaaggaatttaacattgaggctgatgctcaagcaaatcgggctatcaatctccgaggttagacct |
2042468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 2063010 - 2063122
Alignment:
| Q |
5 |
aatgttgaaggaacataacactgaagctgatgctcaagcaaatcgggccatctttctcggaggttagaccttaataaatttcttagatccctacaagttt |
104 |
Q |
| |
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|||||| |||||| |||||||||||| | ||||||||||||| ||||| |||| ||| | |||||||| | || | |||||||| | |||| | |||| |
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| T |
2063010 |
aatgtttaaggaatataacactgaagttaatgctcaagcaaaccgggctatctatcttcgtggttagacgtcaagacttttcttagtttcctatatgttt |
2063109 |
T |
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| Q |
105 |
caattgtttgatt |
117 |
Q |
| |
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||| ||||||||| |
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| T |
2063110 |
caaatgtttgatt |
2063122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 2107402 - 2107436
Alignment:
| Q |
187 |
ttttagtttgattatttgatttcctagtatatcag |
221 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| |
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| T |
2107402 |
ttttagtttgattatttgatttcctaatatatcag |
2107436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 2055022 - 2055090
Alignment:
| Q |
5 |
aatgttgaaggaacataacactgaagctgatgctcaagcaaatcgggccatctttctcggaggttagac |
73 |
Q |
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|||||| |||||| |||||||| |||||||||||||||||| ||||| ||| ||| |||||||||| |
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| T |
2055022 |
aatgtttaaggaatttaacactggagctgatgctcaagcaaaccgggctatcaatcttcgaggttagac |
2055090 |
T |
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