View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2225_low_10 (Length: 234)
Name: NF2225_low_10
Description: NF2225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 40275966 - 40275760
Alignment:
| Q |
12 |
gagatgaagcaacgaagattacaacagagacattcggtttatcaagaactttttattttgtctagacgaagtgataaagactacttaaacttacagacac |
111 |
Q |
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| T |
40275966 |
gagataaagcaacgaagattacaacagagacattcggtttatcaagaactttttattttgtctaaacgaagtgataaagactactgaaacttacacacac |
40275867 |
T |
|
| Q |
112 |
tgcaaggtctcggattcaaacacagatgaatgcgtccaatctaacaa--ttgacattgtcagttgagctaggctttacgcatggcttattaggaatttag |
209 |
Q |
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|||||||||||||||||||| ||||||||||||||| || ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40275866 |
tgcaaggtctcggattcaaatacagatgaatgcgtctaacctaacaattttgacattgtcagttgagctaggctttacggatggcttattaggaatttag |
40275767 |
T |
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| Q |
210 |
ctatata |
216 |
Q |
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||||||| |
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| T |
40275766 |
ctatata |
40275760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 35979125 - 35979204
Alignment:
| Q |
111 |
ctgcaaggtctcggattcaaacacagatgaatgcgtccaatctaacaatt--gacattgtcagttgagctaggctttacg |
188 |
Q |
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|||||||||||||| ||||||| ||| |||| |||| ||| ||||||||| ||||| |||||||||| ||||||||| |
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| T |
35979125 |
ctgcaaggtctcgggttcaaactcaggtgaaggcgttcaacctaacaatttcatcattgccagttgagcttggctttacg |
35979204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 36000537 - 36000616
Alignment:
| Q |
111 |
ctgcaaggtctcggattcaaacacagatgaatgcgtccaatctaacaatt--gacattgtcagttgagctaggctttacg |
188 |
Q |
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|||||||||||||| ||||||| ||| |||| |||| ||| ||||||||| ||||| |||||||||| ||||||||| |
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| T |
36000537 |
ctgcaaggtctcgggttcaaactcaggtgaaggcgttcaacctaacaatttcatcattgccagttgagcttggctttacg |
36000616 |
T |
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