View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2225_low_13 (Length: 209)
Name: NF2225_low_13
Description: NF2225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 37851749 - 37851575
Alignment:
| Q |
13 |
atgaatatatatgcaatgacagaaacatgcaaccctccaata--accccttttgcttaggacattcatggtcctatgaaaaacagagttgcccctgattg |
110 |
Q |
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| T |
37851749 |
atgaatatatatgcaatgacagaaacatgcaaccctccaatagaaccccttttgcttaggacattcatggtcctatgaaaatcagagttgcccctgattg |
37851650 |
T |
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| Q |
111 |
aatccacttgcaaagctaattaactaagtgactctttgaagtgacgtttgatgaagcaaaaacatatctgcacac |
185 |
Q |
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| T |
37851649 |
aatccacttgcaaagctaattaactaagtgactctttgaagtgacgtttgatgaaacaaaaatatatctgcacac |
37851575 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 17409108 - 17409156
Alignment:
| Q |
134 |
ctaagtgactctttgaagtgacgtttgatgaagcaaaaacatatctgca |
182 |
Q |
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| T |
17409108 |
ctaagtgtctgtttgaagtggcgtttgatgaagcaaaatcatatctgca |
17409156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 30872685 - 30872632
Alignment:
| Q |
132 |
aactaagtgactctttgaagtgacgtttgatgaagcaaaaacatatctgcacac |
185 |
Q |
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|||| |||| || |||| ||||||||||||| ||||||||||| |||||||||| |
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| T |
30872685 |
aacttagtgtctgtttggagtgacgtttgataaagcaaaaacacatctgcacac |
30872632 |
T |
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