View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2225_low_2 (Length: 371)
Name: NF2225_low_2
Description: NF2225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 8 - 347
Target Start/End: Original strand, 702152 - 702491
Alignment:
| Q |
8 |
attgaaccaaaaaccaaatcatattttattcaaataatacaaacactgatataagtgtaaggtacatatcaattgtgtactttcaattataactatcaac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
702152 |
attgaaccaaaaaccaaatcatattttattcaaataatacaaacactgatataagtgtaaggtacatatcaattgtgtactttcaattataactatcaac |
702251 |
T |
|
| Q |
108 |
atggtagtatcatgttctagttgttatccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagcttttgtgagaacttctga |
207 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
702252 |
atggtagtatcatgttctagtagttgtccacccagaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctga |
702351 |
T |
|
| Q |
208 |
agagatttttggattagatccaaatacagcatgagcaattgtgattacccctgtattttggctgctaagtccagccatagcaactgcatttccatatccc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
702352 |
agagatttttggattagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatccc |
702451 |
T |
|
| Q |
308 |
acattcaattggaagtgactgagaccaattgtaaacacaa |
347 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
702452 |
acattcaattggaagtgaatgagaccaattggaaacacaa |
702491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 122 - 347
Target Start/End: Original strand, 717568 - 717793
Alignment:
| Q |
122 |
ttctagttgttatccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagcttttgtgagaacttctgaagagatttttggat |
221 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
717568 |
ttctagttgttgtccacccagaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggat |
717667 |
T |
|
| Q |
222 |
tagatccaaatacagcatgagcaattgtgattacccctgtattttggctgctaagtccagccatagcaactgcatttccatatcccacattcaattggaa |
321 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| || | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
717668 |
tagatccaaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa |
717767 |
T |
|
| Q |
322 |
gtgactgagaccaattgtaaacacaa |
347 |
Q |
| |
|
|||| |||||||||||| |||||||| |
|
|
| T |
717768 |
gtgaatgagaccaattggaaacacaa |
717793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 122 - 347
Target Start/End: Original strand, 710535 - 710760
Alignment:
| Q |
122 |
ttctagttgttatccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagcttttgtgagaacttctgaagagatttttggat |
221 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
710535 |
ttctagttgttgtccacccaaaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggat |
710634 |
T |
|
| Q |
222 |
tagatccaaatacagcatgagcaattgtgattacccctgtattttggctgctaagtccagccatagcaactgcatttccatatcccacattcaattggaa |
321 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| || | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
710635 |
tagatccaaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa |
710734 |
T |
|
| Q |
322 |
gtgactgagaccaattgtaaacacaa |
347 |
Q |
| |
|
|||| |||||||||||| |||||||| |
|
|
| T |
710735 |
gtgaatgagaccaattggaaacacaa |
710760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 122 - 347
Target Start/End: Complemental strand, 713172 - 712947
Alignment:
| Q |
122 |
ttctagttgttatccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagcttttgtgagaacttctgaagagatttttggat |
221 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
713172 |
ttctagttgttgtccacccagaattgtttttgaagattatccactatattattgtcaacttgaaaagctttggtgagaacttctgaagaaatttttggat |
713073 |
T |
|
| Q |
222 |
tagatccaaatacagcatgagcaattgtgattacccctgtattttggctgctaagtccagccatagcaactgcatttccatatcccacattcaattggaa |
321 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| || | ||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| || |
|
|
| T |
713072 |
tagatccaaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaactgcatttccatacccaacattcaattgaaa |
712973 |
T |
|
| Q |
322 |
gtgactgagaccaattgtaaacacaa |
347 |
Q |
| |
|
|||| |||| ||||||| |||||||| |
|
|
| T |
712972 |
gtgaatgaggccaattggaaacacaa |
712947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 122 - 347
Target Start/End: Complemental strand, 717027 - 716805
Alignment:
| Q |
122 |
ttctagttgttatccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagcttttgtgagaacttctgaagagatttttggat |
221 |
Q |
| |
|
||||| ||||| |||| |||||||||||| ||||||||||||||||| |||||||| ||||||| ||| || ||||||| ||||||||| |||| ||| |
|
|
| T |
717027 |
ttctaattgttgtccaaccagaattgtttctgaagattgtcaactatgttattgtccacttgaagagccttggtgagaagttctgaagaaattt---gat |
716931 |
T |
|
| Q |
222 |
tagatccaaatacagcatgagcaattgtgattacccctgtattttggctgctaagtccagccatagcaactgcatttccatatcccacattcaattggaa |
321 |
Q |
| |
|
|||| |||||||| | | | ||| ||||| || | || ||| |||||| ||||||||| || |||| |||||||||| |||| ||| |||||| |
|
|
| T |
716930 |
tagacccaaatacctccttaataatagtgataactcttgaattatggctgttaagtccagaaatgacaaccgcatttccatcccccatattatgttggaa |
716831 |
T |
|
| Q |
322 |
gtgactgagaccaattgtaaacacaa |
347 |
Q |
| |
|
|||| | |||||||||| |||||||| |
|
|
| T |
716830 |
gtgaataagaccaattggaaacacaa |
716805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 347
Target Start/End: Complemental strand, 35313843 - 35313635
Alignment:
| Q |
139 |
ccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagcttttgtgagaacttctgaagagatttttggattagatccaaatacagca |
238 |
Q |
| |
|
||||||||| |||||||||| ||| | || ||| || || |||||||| ||||| ||||||||||| |||| ||| ||| ||||||||||| |||||| |
|
|
| T |
35313843 |
ccagaattgcttttgaagatagtcgattacatttttatccacttgaaaggctttggtgagaacttccaaagaaattggtggtttagatccaaacacagca |
35313744 |
T |
|
| Q |
239 |
tgagcaattgtgattacccctgtattttggctgctaagtccagccatagcaactgcatttccatatcccacattcaattggaagtgactgagaccaattg |
338 |
Q |
| |
|
| ||||| || || || || | |||||||| ||||| ||||| || |||| || | ||||| || || ||||||||||||||| ||||||| |||| |
|
|
| T |
35313743 |
tttgcaatggtaatcactccagggttttggctactaagaccagcaatggcaatagcctccccataaccaacgttcaattggaagtgaatgagaccgattg |
35313644 |
T |
|
| Q |
339 |
taaacacaa |
347 |
Q |
| |
|
|||||||| |
|
|
| T |
35313643 |
gaaacacaa |
35313635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 248 - 347
Target Start/End: Complemental strand, 20354033 - 20353934
Alignment:
| Q |
248 |
gtgattacccctgtattttggctgctaagtccagccatagcaactgcatttccatatcccacattcaattggaagtgactgagaccaattgtaaacacaa |
347 |
Q |
| |
|
|||||||| |||| |||||| |||||||||||||| |||||||| || || |||||||||||||||| ||| || ||| | |||||||||| ||||||| |
|
|
| T |
20354033 |
gtgattactcctggattttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagttgaaaatgaataagaccaattgggaacacaa |
20353934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 248 - 347
Target Start/End: Original strand, 20357822 - 20357921
Alignment:
| Q |
248 |
gtgattacccctgtattttggctgctaagtccagccatagcaactgcatttccatatcccacattcaattggaagtgactgagaccaattgtaaacacaa |
347 |
Q |
| |
|
||||| || |||| |||||| |||||||||||||| |||||||| ||||| |||||||||||||||| ||| || ||| | |||||||||| ||||||| |
|
|
| T |
20357822 |
gtgataactcctggattttgactgctaagtccagcaatagcaacggcattgccatatcccacattcagttgaaaatgaataagaccaattgggaacacaa |
20357921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 347
Target Start/End: Original strand, 5278455 - 5278554
Alignment:
| Q |
248 |
gtgattacccctgtattttggctgctaagtccagccatagcaactgcatttccatatcccacattcaattggaagtgactgagaccaattgtaaacacaa |
347 |
Q |
| |
|
||||| || |||| |||||| |||||||||||||| |||||||| || || |||||||||||||||| ||| || ||| | |||||||||| ||||||| |
|
|
| T |
5278455 |
gtgataactcctggattttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagttgaaaatgaataagaccaattgggaacacaa |
5278554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 347
Target Start/End: Original strand, 5286436 - 5286535
Alignment:
| Q |
248 |
gtgattacccctgtattttggctgctaagtccagccatagcaactgcatttccatatcccacattcaattggaagtgactgagaccaattgtaaacacaa |
347 |
Q |
| |
|
||||| || |||| |||||| |||||||||||||| |||||||| || || |||||||||||||||| ||| || ||| | |||||||||| ||||||| |
|
|
| T |
5286436 |
gtgataactcctggattttgactgctaagtccagcaatagcaacggcgttgccatatcccacattcagttgaaaatgaataagaccaattgggaacacaa |
5286535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 5282626 - 5282575
Alignment:
| Q |
263 |
ttttggctgctaagtccagccatagcaactgcatttccatatcccacattca |
314 |
Q |
| |
|
||||| |||||||||||||| |||||||| || || |||||||||||||||| |
|
|
| T |
5282626 |
ttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattca |
5282575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 347
Target Start/End: Original strand, 6235423 - 6235507
Alignment:
| Q |
263 |
ttttggctgctaagtccagccatagcaactgcatttccatatcccacattcaattggaagtgactgagaccaattgtaaacacaa |
347 |
Q |
| |
|
||||| |||||||||||||| |||||||| || || |||||||||||||| | ||| || ||| | |||||||||| ||||||| |
|
|
| T |
6235423 |
ttttgactgctaagtccagcaatagcaacagcgttgccatatcccacatttagttgaaaatgaataagaccaattgggaacacaa |
6235507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University