View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2225_low_3 (Length: 364)
Name: NF2225_low_3
Description: NF2225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 21 - 363
Target Start/End: Complemental strand, 42163950 - 42163603
Alignment:
| Q |
21 |
ttagtatcatatgatggctagaattggattaacctatggtggagtgaacatatagaaa-----acaaaacaataacaagatttttgcttcattaagtcat |
115 |
Q |
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| T |
42163950 |
ttagtatcatatgatggctagaattggattaacctatggtggagtgaacatatagaaagaaaaaaaaaacaataacaagatttttgcttcattaagtcat |
42163851 |
T |
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| Q |
116 |
ttgttaatcatgtttaatgatttggagtctcttttttgacaggtgagagaactggaaacaaatcccctgttcaattctgggcgtggatctgctttgacag |
215 |
Q |
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| T |
42163850 |
ttgttaatcatgtttaatgatttggagtctcttttttgacaggtgagagaactggaaacaaatcccctgttcaattctgggcgtggatctgctttgacag |
42163751 |
T |
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| Q |
216 |
caaaaggaacagttgaaatggaggctagcatcatggatggtacaaagagaagatgtggtgctgtatctggtgttaccaccgtgaaaaaccctgtctcact |
315 |
Q |
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| T |
42163750 |
caaaaggaacagttgaaatggaggctagcataatggatggtacaaagagaagatgtggtgctgtatctggtgttaccaccgtgaaaaaccctgtctcact |
42163651 |
T |
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| Q |
316 |
tgctcgccttgtcatggaaaagtcccctcattcatacctatgcttctc |
363 |
Q |
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| T |
42163650 |
tgctcgccttgtcatggaaaagtcccctcattcatacctaggcttctc |
42163603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 5480776 - 5480656
Alignment:
| Q |
156 |
aggtgagagaactggaaacaaatcccctgttcaattctgggcgtggatctgctttgacagcaaaaggaacagttgaaatggaggctagcatcatggatgg |
255 |
Q |
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| T |
5480776 |
aggtgagggaattggaaacggatccactattcaattcgggtcgtggatctgccctgacggaaaaaggaacggtggaaatggaggctagcataatggatgg |
5480677 |
T |
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| Q |
256 |
tacaaagagaagatgtggtgc |
276 |
Q |
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| T |
5480676 |
accaaaaagacgatgcggtgc |
5480656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 185 - 354
Target Start/End: Original strand, 47170573 - 47170742
Alignment:
| Q |
185 |
ttcaattctgggcgtggatctgctttgacagcaaaaggaacagttgaaatggaggctagcatcatggatggtacaaagagaagatgtggtgctgtatctg |
284 |
Q |
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| T |
47170573 |
ttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaaatggaggctagtatcatggatggtaccaagagaagatgtggtgctgtatctg |
47170672 |
T |
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| Q |
285 |
gtgttaccaccgtgaaaaaccctgtctcacttgctcgccttgtcatggaaaagtcccctcattcatacct |
354 |
Q |
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| T |
47170673 |
gtgtttccaccgtgaaaaatccaatctctcttgctcgtcttgtcatggaaaaatcccctcattcctacct |
47170742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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