View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2225_low_5 (Length: 347)
Name: NF2225_low_5
Description: NF2225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 3 - 333
Target Start/End: Original strand, 26643225 - 26643557
Alignment:
| Q |
3 |
aggagaagcataggaaggtggaagaggaagtgagaagattaaagcagagaaagtggtggagattagacacaaagataagggtcttcttgttatgttacat |
102 |
Q |
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| T |
26643225 |
aggagaagaataggaaggtggaagaggaagtgagaagattaaagcagagaaagtggtggagattagagacaaagataagggtcttcttgttatgttacat |
26643324 |
T |
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| Q |
103 |
ggatattttgtgtgagggagagtggcatacacacgtgttgcacttccaaagacacagtattttattatcttcatcttcattttatctcttgttccctaac |
202 |
Q |
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| T |
26643325 |
ggatattttgtgtgagggagagtggcatacacacgtgttgcacttccaaagacacagtattttattatcttcatcttcattttatctcttgtcccctaac |
26643424 |
T |
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| Q |
203 |
attgatacttaaagcttgcttcattcaaatcacttttggactaaaat--tagctgcaattttgtgtgttggctttatttttattattgttcttcaattaa |
300 |
Q |
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| T |
26643425 |
attgatacttaaagcttgcttcattcaaatcacttttggactaaaattatagctgcaattttgtgtgttggttttatttttattattgttcttcaattaa |
26643524 |
T |
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| Q |
301 |
aattgtaactaagttgttaaatatacaaacttt |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
26643525 |
aattgtaactaagttgttaaatatacaaacttt |
26643557 |
T |
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