View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2225_low_9 (Length: 236)
Name: NF2225_low_9
Description: NF2225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2225_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 49654421 - 49654201
Alignment:
| Q |
1 |
ccccttaccaccagccggagatttctccggtgagccagcactggtttttgtgttagtactcttgcttttaccgttacacttctcagcattttcaattccc |
100 |
Q |
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| T |
49654421 |
ccccttaccaccagccggagatttctccggtgagccagcactggtttttgtgttagtactcttgcttttaccgttacacttctcagcattttcaattccc |
49654322 |
T |
|
| Q |
101 |
ttgtctttggcagagttgaggttggattcagtatttgcagaacaatggtctttcttttgctgagtttcttggnnnnnnngttcactcttattgttgtttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
49654321 |
ttgtctttggcagagttgaggttggattcagtatttgcagaacaatggtctttcttttgctgagtttcttggtttttttgttcactcttattgttgtttt |
49654222 |
T |
|
| Q |
201 |
tagctttgttggagtccttta |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
49654221 |
tagctttgttggagtccttta |
49654201 |
T |
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