View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2226R-Insertion-1 (Length: 972)
Name: NF2226R-Insertion-1
Description: NF2226R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2226R-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 872; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 872; E-Value: 0
Query Start/End: Original strand, 8 - 960
Target Start/End: Complemental strand, 3879877 - 3878922
Alignment:
| Q |
8 |
agattcacactcagaga--tccacttattggaaagattggcattgcaatgctaatgaagttaagctatcctgtttttgcagtgctaatttctgcatatac |
105 |
Q |
| |
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||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
3879877 |
agattcacactcagagagatccacttcttggaaagattggcattgcaatgctaatgaagttaagctatcctgcttttgcagtgctaatgtctgcatatac |
3879778 |
T |
|
| Q |
106 |
tctagaatatatgagaatggggaatgaaacaagacataagtataagtgtataacacatacttgaagtgaatttgaagtgatattgatccggtgaagtaca |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879777 |
tctagaatatatgagaatggggaatgaaacaagacataagtataagtgtataacacatacttgaagtgaatttgaagtgatattgatccggtgaagtaca |
3879678 |
T |
|
| Q |
206 |
gagcagtcagacacttgtatagaagaaagcgatatagccctcaagttcaaatctgctaatctgcaaaggaaaccattcnnnnnnntaaattaggcgcaac |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3879677 |
gagcagtcagacacttgtatagaagaaagcgatatagccctcaagttcaaatctgctaatctgcaaaggaaaccattcaaaaaaataaattaggcgcaac |
3879578 |
T |
|
| Q |
306 |
aatagaaaaaaggatttggtattgacttaaacagaaagtgaaaagcaatagagagagacggatcaataatagaattatagtgcttttctggggagagaga |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879577 |
aatagaaaaaaggatttggtattgacttaaacagaaagtgaaaagcaatagagagagacggatcaataatagaattatagtgcttttctggggagagaga |
3879478 |
T |
|
| Q |
406 |
aaatgaagcagaaacatacttgcgacagtacgccaatctaatattcttcaaacgtggaagatccaacgacgcttaagtcaatagactgtaactgcggagt |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
3879477 |
aaatgaagcagaaacatacttgcgacagtacgccaatctaatattcttcaaatgtggaagatccaacgacgctcaagtcaatagactgcaactgcggagt |
3879378 |
T |
|
| Q |
506 |
tacaaaacctgcattggcggggtgataaaatgtattaatcgtaatactcatgaattcagacatgtcattaatatcaatatctgggacagataaaatacct |
605 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3879377 |
tacaaaacctgcattggcggggtggttaaatgtattaatcgtaatactcatgaattcagacatgtcattaatatcaatatctgggacagataaaatacct |
3879278 |
T |
|
| Q |
606 |
ccaacatagagctatgagctatagcagccattgatgcagaagtgatgccctcgcagctatgaagccttagaattgtcaacattgtcatccgaaccgactt |
705 |
Q |
| |
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| T |
3879277 |
ccaacatagagctatgagctatagcagccattgatgcagaagtgatgccctcgcagctatgaagccttagaattgtcaacattgtcatccgaaccgactt |
3879178 |
T |
|
| Q |
706 |
aaaagagaaaagccatatactttagttcaaaatacaagcttacatatgcaaaaaagcgagtatacaatttgaagcacacctccaaagatatgcttgggca |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3879177 |
aaaagagaaaagccatatactttagttcaaaatacaagcttacatatgcaaaaaagcgagtatacaatttgaagcacacctccaaagatatgcttgggca |
3879078 |
T |
|
| Q |
806 |
gtatgatgaatcaagaaaaccaagattaggacaatgctgcgctatttcacgcagggtttcatcgctgacacaagaacagttacgcatgtccagcttcacc |
905 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879077 |
gtatgatgaatcaagaaaaccaagattaggacaatgctgcgctatttcacgcagggtttcatcgctgacacaagaacagttacgcatgtccagcttcacc |
3878978 |
T |
|
| Q |
906 |
agttgagggcatgaggttgcagcagcacgaataacagcatca-gaagtttggtgca |
960 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||| |||||||| |||| |
|
|
| T |
3878977 |
agttgagggcatgaagttgcaacagcacgaataacagcatcaggaagtttgttgca |
3878922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 388 - 948
Target Start/End: Complemental strand, 3865513 - 3864938
Alignment:
| Q |
388 |
cttttctggggagagagaaaatgaagcagaaacatacttgcgacagtacgccaatctaatattcttcaaacgtggaagatccaacgacgcttaagtcaat |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| | |||||||| |
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|
| T |
3865513 |
cttttctggggagagagaaaatgaagcagaaacatacttgcgacagtacaccaatctaatattctgcaaacgtggaagatccaacgacaccgaagtcaat |
3865414 |
T |
|
| Q |
488 |
agactgtaactgcggagttacaaaacctgcattggcggggtgataaaatgtattaatcgtaatactcatgaattcagacatgtcattaatatcaatatct |
587 |
Q |
| |
|
|||||| || || || | |||||||||||||||| | | || ||||| | || |||||||| ||||||||||| ||| ||||||||||||||| |
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| T |
3865413 |
agactgcaattgtcaagctccaaaacctgcattggcag--ttatgtcatgtactcgtcctaatactcgggaattcagacaagtcgttaatatcaatatct |
3865316 |
T |
|
| Q |
588 |
gggacagataaaatacctccaacatagagctatgagctatagcagccattgatgcagaagtgatgccctcgcagctatgaagccttagaattgtcaacat |
687 |
Q |
| |
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|| ||| |||| |||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| |
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|
| T |
3865315 |
ggaacaaataacatacctccaacatagaactgtgagctattgcagccattgacgcagaagtgatgccctcacagctatgaagtcttagaatggtcaacat |
3865216 |
T |
|
| Q |
688 |
tgtcatccgaaccgacttaaaagagaaa------------------agccatatactttagttcaaaatacaagcttacatatgcaaaaaagcgagtata |
769 |
Q |
| |
|
|| | ||||| ||||||||| ||||| ||| | | ||| | ||||||||||||| |||| |||||||||||| |||||| |
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|
| T |
3865215 |
tgggagtcgaacagacttaaaaaagaaaggtgaccgtgtcagacaaagctagaaactcttgttcaaaatacaatcttaaatatgcaaaaaata-agtata |
3865117 |
T |
|
| Q |
770 |
caatttgaagcacacctccaaagatatgcttgggcagtatgatgaatcaagaaaaccaagattaggacaatgctgcgctatttcacgcagggtttcatcg |
869 |
Q |
| |
|
|| ||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||||||| |
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|
| T |
3865116 |
cagtttaaagcacacctccaaagatatgtttgggcagtatgatgcatcaagaaaaccaagattaggacaatgttgtgctatttcacgcagtgtttcatcg |
3865017 |
T |
|
| Q |
870 |
ctgacacaagaacagttacgcatgtccagcttcaccagttgagggcatgaggttgcagcagcacgaataacagcatcag |
948 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
3865016 |
ctgacacaagaacaattacgcatgtccagtttcactagttgagggcatgaagttgcagcagcacgaatagcagcatcag |
3864938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 160 - 283
Target Start/End: Complemental strand, 3865732 - 3865609
Alignment:
| Q |
160 |
acatacttgaagtgaatttgaagtgatattgatccggtgaagtacagagcagtcagacacttgtatagaagaaagcgatatagccctcaagttcaaatct |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
3865732 |
acatacttgaagtgaatttgaagtgatattgatccggtggagtacagagcagttagacacttgtatagaagaaagcgatatagctctcaaattcaaatct |
3865633 |
T |
|
| Q |
260 |
gctaatctgcaaaggaaaccattc |
283 |
Q |
| |
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|||||||||| ||||||||||||| |
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|
| T |
3865632 |
gctaatctgccaaggaaaccattc |
3865609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 3865900 - 3865805
Alignment:
| Q |
9 |
gattcacactcagaga--tccacttattggaaagattggcattgcaatgctaatgaagttaagctatcctgtttttgcagtgctaatttctgcata |
102 |
Q |
| |
|
|||||||||||||||| ||||||| ||| |||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3865900 |
gattcacactcagagaggtccacttcttgtaaagattggcattgcagcgctaatgtagttaagctatcctgcttttgcagtgctaatttctgcata |
3865805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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