View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2226R-Insertion-10 (Length: 442)
Name: NF2226R-Insertion-10
Description: NF2226R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2226R-Insertion-10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 8 - 442
Target Start/End: Original strand, 1515951 - 1516384
Alignment:
| Q |
8 |
agttgcatacttaatcatgtacatcatatatgctcccaagaagcttaaggtacgtaataccataatcacaacatctttatgaaagtgtgtccgacctgac |
107 |
Q |
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| T |
1515951 |
agttgcatacttaatcatgtacatcatatatgctcccaagaagcttaaggtacgtaataccataatcacaacatctatatgaaagtgtgtccgacctgac |
1516050 |
T |
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| Q |
108 |
actgacactcatataagtggttacttttaataattttaaattttcaaattattatcgatgttgatgtattaacatgagtgtctgtactcgatatccatgt |
207 |
Q |
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| T |
1516051 |
actgacactcatataagtggttacttttaataatttcaaactttcaaattattatcgatgttgatatattaacatgagtgtc-gtgctcgatatccatgt |
1516149 |
T |
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| Q |
208 |
atgtgttaatctttctttggatttatatacctagaacatgagttagtacgattatatatataacgtgcggaaattaataaatgttttgatgaattgcaga |
307 |
Q |
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| T |
1516150 |
atgtgttaatctttctttggatttatatacctagaacatgagttagtacgattatatatataacgtgcggaaattaataaatgttttgatgaattgcaga |
1516249 |
T |
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| Q |
308 |
tatccactttggtttttatacttgttgctgacctaggaggatttggcttgaccatgataatcaccttctttgtggtgaagtcctcctttcgtgttcatgc |
407 |
Q |
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| T |
1516250 |
tatccactttggtttttatacttgttgctgacctaggaggatttggcttgaccatgataatcaccttctttgtggtgaagtcctcctttcgtgttcatgc |
1516349 |
T |
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| Q |
408 |
tgttgggttgatttgtgccatttttaacattgcag |
442 |
Q |
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| T |
1516350 |
tgttgggttgatttgtgccatttttaacattgcag |
1516384 |
T |
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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 276 - 372
Target Start/End: Complemental strand, 40444646 - 40444550
Alignment:
| Q |
276 |
ggaaattaataaatgttttgatgaattgcagatatccactttggtttttatacttgttgctgacctaggaggatttggcttgaccatgataatcacc |
372 |
Q |
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| T |
40444646 |
ggaaattaattaatgttttgatgaattgcagatatccactttggttttgatacttattgttgacatgggaggttttggcttgacaatgataatcacc |
40444550 |
T |
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