View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2226R-Insertion-12 (Length: 300)
Name: NF2226R-Insertion-12
Description: NF2226R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2226R-Insertion-12 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 278
Target Start/End: Original strand, 31532585 - 31532854
Alignment:
| Q |
9 |
aaaagctcggctccatggtcttagcatgtgccttatgtttgttatatcaaataatatggtgtaaatatataccaaaactgttccatannnnnnnnnnnnn |
108 |
Q |
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| T |
31532585 |
aaaagcttggctccatggtcttagcatgtgccttatgtttgttatatcaaataatctggtgtaaatatataccaaaactgttccataattttatttttat |
31532684 |
T |
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| Q |
109 |
nnnnnnnnnnnngattgattgggtccccaattttaatagaataaccaaatcataattataacatatattttcaatgtgattgatcaagaatgatatacct |
208 |
Q |
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| T |
31532685 |
tatttttttttagattgattgggtccccaattttaatagaataaccaaatcataattataacatatattttcaatgtgattgatcaagaatgatatacct |
31532784 |
T |
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| Q |
209 |
ttatgattagagagatcgtctcaatgggagagcaaaaattggaggatgagtatagtcattgccgtctaag |
278 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31532785 |
ttatgattagagagatcgtctctatgggagagcaaaaattagaggatgagtatagtcattgccgtctaag |
31532854 |
T |
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