View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2226R-Insertion-15 (Length: 101)

Name: NF2226R-Insertion-15
Description: NF2226R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2226R-Insertion-15
NF2226R-Insertion-15
[»] chr3 (15 HSPs)
chr3 (8-101)||(5156007-5156100)
chr3 (8-94)||(5160037-5160123)
chr3 (14-93)||(51942898-51942977)
chr3 (14-71)||(46479558-46479615)
chr3 (10-67)||(46526729-46526786)
chr3 (14-70)||(46497713-46497769)
chr3 (17-82)||(45884024-45884089)
chr3 (10-67)||(45902718-45902775)
chr3 (11-58)||(46549300-46549347)
chr3 (14-71)||(46473697-46473754)
chr3 (11-60)||(46544222-46544271)
chr3 (9-78)||(47397615-47397684)
chr3 (11-94)||(46490475-46490557)
chr3 (12-48)||(4581745-4581781)
chr3 (10-45)||(4614165-4614200)
[»] chr4 (3 HSPs)
chr4 (8-71)||(35162201-35162264)
chr4 (8-58)||(35155180-35155230)
chr4 (14-59)||(15555780-15555825)
[»] chr8 (2 HSPs)
chr8 (8-94)||(9692995-9693081)
chr8 (8-70)||(9675997-9676059)
[»] chr2 (3 HSPs)
chr2 (15-87)||(20358898-20358970)
chr2 (15-87)||(20144386-20144458)
chr2 (15-71)||(20169332-20169388)
[»] chr7 (6 HSPs)
chr7 (12-101)||(17708039-17708128)
chr7 (12-101)||(16721916-16722005)
chr7 (12-101)||(17698930-17699019)
chr7 (11-68)||(17717862-17717919)
chr7 (15-99)||(17744877-17744961)
chr7 (11-101)||(17735692-17735782)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 1e-41; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-41
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 5156007 - 5156100
Alignment:
Q  8 actaaagaagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaacccgcctca 101  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5156007 actaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaacccgcctca 5156100  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 4e-35
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 5160037 - 5160123
Alignment:
Q  8 actaaagaagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaacc 94  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  5160037 actaaagaagtgaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctctaagatcagttgataggttaacc 5160123  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 9e-24
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 51942898 - 51942977
Alignment:
Q  14 gaagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaac 93  Q
    ||||||||  |||||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  51942898 gaagtgaacatatgggttgaaaaagagacaaatggccttattaaagaacttattcctccaggatcagttgatagcttaac 51942977  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 46479558 - 46479615
Alignment:
Q  14 gaagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcctc 71  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  46479558 gaagtgaattcatgggctgaaaaagagacaaatggccttattaaagaacttcttcctc 46479615  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 46526786 - 46526729
Alignment:
Q  10 taaagaagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttctt 67  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  46526786 taaagaagtgaatttatgggctgaaaaagagacaaatggccttattagagaacttctt 46526729  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 46497713 - 46497769
Alignment:
Q  14 gaagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcct 70  Q
    ||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||    
T  46497713 gaagtgaatttatgggctgaaagagagacaaatggtcttattaaagaacttcttcct 46497769  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 45884089 - 45884024
Alignment:
Q  17 gtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcctccaagatcagtt 82  Q
    |||||||||||||||||||| ||||||||||| |||||||||||| ||||| ||||| | ||||||    
T  45884089 gtgaatttatgggctgaaaaagagacaaatggtcttattaaagaaattctttctccagggtcagtt 45884024  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 45902718 - 45902775
Alignment:
Q  10 taaagaagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttctt 67  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||| ||| |||||    
T  45902718 taaaaaagtgaatttatgggctgaaaaagagacaaatggccttattaatgaatttctt 45902775  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 46549347 - 46549300
Alignment:
Q  11 aaagaagtgaatttatgggctgaaaacgagacaaatggccttattaaa 58  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||    
T  46549347 aaagaagtgaatttatgggctgaaaaagagacaaatggtcttattaaa 46549300  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 46473697 - 46473754
Alignment:
Q  14 gaagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcctc 71  Q
    ||||||||  ||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  46473697 gaagtgaacatatgggctgaaaaagagacaaatggtcttattaaagaaattcttcctc 46473754  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 46544222 - 46544271
Alignment:
Q  11 aaagaagtgaatttatgggctgaaaacgagacaaatggccttattaaaga 60  Q
    |||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  46544222 aaagaagtgaatttatgggctgaaaaagagacaaatggtcttataaaaga 46544271  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 47397684 - 47397615
Alignment:
Q  9 ctaaagaagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcctccaagatc 78  Q
    |||||||||| |||||||||||  |||| |||||||||||  ||||||||||| || |||||||||||||    
T  47397684 ctaaagaagtaaatttatgggccaaaaatgagacaaatggttttattaaagaaatttttcctccaagatc 47397615  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 46490475 - 46490557
Alignment:
Q  11 aaagaagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaacc 94  Q
    |||||||||||||||||||||| |||  ||||||||||  |||||||| ||||||||||| | || || ||| |||||||||||    
T  46490475 aaagaagtgaatttatgggctgcaaaa-agacaaatggtattattaaacaacttcttccttccaggtcggttaatagcttaacc 46490557  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 4581781 - 4581745
Alignment:
Q  12 aagaagtgaatttatgggctgaaaacgagacaaatgg 48  Q
    ||||||||||||||||||||||||| |||||||||||    
T  4581781 aagaagtgaatttatgggctgaaaaagagacaaatgg 4581745  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 4614200 - 4614165
Alignment:
Q  10 taaagaagtgaatttatgggctgaaaacgagacaaa 45  Q
    ||||||||||||||||||||||||||| ||||||||    
T  4614200 taaagaagtgaatttatgggctgaaaaagagacaaa 4614165  T

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Target: chr4 (Bit Score: 56; Significance: 9e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 9e-24
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 35162201 - 35162264
Alignment:
Q  8 actaaagaagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcctc 71  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  35162201 actaaagaagtgaatttatgggctgaaaaagaaacaaatggccttattaaagaacttcttcctc 35162264  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 35155180 - 35155230
Alignment:
Q  8 actaaagaagtgaatttatgggctgaaaacgagacaaatggccttattaaa 58  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  35155180 actaaagaagtgaatttatgggctaaaaaagagacaaatggccttattaaa 35155230  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 15555780 - 15555825
Alignment:
Q  14 gaagtgaatttatgggctgaaaacgagacaaatggccttattaaag 59  Q
    ||||| |||| ||||| |||||| ||||||||||||||||||||||    
T  15555780 gaagtcaattcatgggttgaaaaggagacaaatggccttattaaag 15555825  T

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Target: chr8 (Bit Score: 51; Significance: 9e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 9e-21
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 9693081 - 9692995
Alignment:
Q  8 actaaagaagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaacc 94  Q
    |||||| |||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| |   |||||||| |||||||||    
T  9693081 actaaacaagtgaatttatgggctgaaaaagagacatatggccttattaaagaaattcttcctcaagcgtcagttgacagcttaacc 9692995  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 9676059 - 9675997
Alignment:
Q  8 actaaagaagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcct 70  Q
    |||||||| |||||||||||||||||||| || ||| | ||||||||||||||| ||||||||    
T  9676059 actaaagaggtgaatttatgggctgaaaaagaaacatacggccttattaaagaaattcttcct 9675997  T

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Target: chr2 (Bit Score: 49; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 20358898 - 20358970
Alignment:
Q  15 aagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcctccaagatcagttgatag 87  Q
    |||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| | || ||||||||||    
T  20358898 aagtgaatttatggtctgaaaaagagacaattggccttattaaagaacttcttcctcgaggaccagttgatag 20358970  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 20144386 - 20144458
Alignment:
Q  15 aagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcctccaagatcagttgatag 87  Q
    |||||||| ||||| | ||||| ||||||| |||||||||||||||||||||||||| | || ||||||||||    
T  20144386 aagtgaatctatggtcggaaaaagagacaattggccttattaaagaacttcttcctcgaggaccagttgatag 20144458  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 20169388 - 20169332
Alignment:
Q  15 aagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcctc 71  Q
    |||||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||    
T  20169388 aagtgaatttatggtcggaaaaagagacaattggccttattaaagaacttcttcctc 20169332  T

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Target: chr7 (Bit Score: 46; Significance: 9e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 9e-18
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 17708039 - 17708128
Alignment:
Q  12 aagaagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaacccgcctca 101  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||| | |||||||| |  || |||||||| ||||||||| ||||||    
T  17708039 aagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacacaggtcagttgacagcttaaccagcctca 17708128  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 16721916 - 16722005
Alignment:
Q  12 aagaagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaacccgcctca 101  Q
    ||||||||||||| ||||||||||| |||||||| || ||||||||| | |||||||| ||  | |||||| | ||||||||||||||||    
T  16721916 aagaagtgaatttctgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacctggctcagttaacagcttaacccgcctca 16722005  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 17698930 - 17699019
Alignment:
Q  12 aagaagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaacccgcctca 101  Q
    ||||||||||||| ||||||||||| |||||||| || ||||||||| | |||||||| ||  | |||||| | ||||||||||||||||    
T  17698930 aagaagtgaatttctgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacctggctcagttaacagcttaacccgcctca 17699019  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 17717862 - 17717919
Alignment:
Q  11 aaagaagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttc 68  Q
    |||||||||||| ||||||||||||| |||||||| || ||||||||| | |||||||    
T  17717862 aaagaagtgaatgtatgggctgaaaaggagacaaaagggcttattaaaaatcttcttc 17717919  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 17744877 - 17744961
Alignment:
Q  15 aagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaacccgcct 99  Q
    ||||||||||||||||||||||  ||||||| || |||||| |||| |||||||| |   |||||||| | ||||||||| ||||    
T  17744877 aagtgaatttatgggctgaaaagaagacaaaagggcttattcaagatcttcttccacacggatcagttaacagcttaaccagcct 17744961  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 17735692 - 17735782
Alignment:
Q  11 aaagaagtgaatttatgggctgaaaacgagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaacccgcctca 101  Q
    ||||||||||||||||||||| | || |||||||| ||  ||||||| || |||||||| |   | |||||||| ||||||||| ||||||    
T  17735692 aaagaagtgaatttatgggctaataaggagacaaaggggtttattaatgatcttcttccacgcgggtcagttgacagcttaaccagcctca 17735782  T

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