View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2226R-Insertion-4 (Length: 762)
Name: NF2226R-Insertion-4
Description: NF2226R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2226R-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 8 - 645
Target Start/End: Complemental strand, 33443865 - 33443240
Alignment:
| Q |
8 |
aaggttaaatcttagagttcatagttcatacataccaattctagaatcattgagtgaaggcaaactaaaaaactttccatattcatcaccacctccaggc |
107 |
Q |
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| T |
33443865 |
aaggttaaatcttagagttcatagttcatacataccaattctagaatcattgagtaaaggcaaactaaaaaactttccatattcatcaccacctccaggc |
33443766 |
T |
|
| Q |
108 |
ttgggaagaccagtcaatattcctttgaacacatgttcagaagctaaaaaagtggatatagtaattaaactggttagtatattaatggattaaatttaag |
207 |
Q |
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| T |
33443765 |
ttgggaagaccagtcaatattcctttgaacacatgttcagaagctaaaaaagtggatatagtaattaaactggttagtatattaatggattaaatttaag |
33443666 |
T |
|
| Q |
208 |
tttcagaaacatataatgagaaaaatgtatgtaatgtagtatagtatagt----------gatcatactcaaggtagccatctctctatccaaacttaac |
297 |
Q |
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| T |
33443665 |
tttcagaaacata--atgagaaaaaagtatgtaatgtagtatagtatagtatagtatagtgatcatactcaaggtagccatctttctatccaaacttaac |
33443568 |
T |
|
| Q |
298 |
tcaacagcaagtaactattaaaggaaaaggctttcatagattgaatttcctatgatatttgtcatggttggagagaaagatatatattacaaagttttta |
397 |
Q |
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| T |
33443567 |
tcaacagcgagtaactattaaaggaaaaggctttcatagattgaatttcctatgatatttgtcatggttggagagaaagatatatatt------------ |
33443480 |
T |
|
| Q |
398 |
ttttattttataatattacaatgaagtatgaaaatgttgagtaatattaatggtgtctttaaataaatgaattcatggttctttactagacaccttgctg |
497 |
Q |
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| T |
33443479 |
--------tataatattacaatgaagtatgaaaatgttgagtaatattaatggtgtctttaaataaatgaattcatggttctttactagacaccttgctg |
33443388 |
T |
|
| Q |
498 |
caatccaaaatagagaccctataaagggtacacgtacgtccttccatgtttcgtttaggcatgcttttcttgaccaagagaaatcgtaaatctaccatta |
597 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33443387 |
caatccaaaatagagaccctataaagggtacacgtacgtccttccatgtttcgtttaggcatgcttttcttgaccaagagaaatcgtgaatctaccatta |
33443288 |
T |
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| Q |
598 |
taattttggacaattttctctaatataagttcttattctctcttattc |
645 |
Q |
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| T |
33443287 |
taattttggacaattttctctaatataagttcttattctctcttattc |
33443240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 707 - 762
Target Start/End: Complemental strand, 33443200 - 33443147
Alignment:
| Q |
707 |
ataaattatggtacaactatcactactcgtattcactaattaagattttttaggtg |
762 |
Q |
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| T |
33443200 |
ataaattatggtacaactatcactactc--attcactaattaatattttttaggtg |
33443147 |
T |
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