View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2226R-Insertion-9 (Length: 546)

Name: NF2226R-Insertion-9
Description: NF2226R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2226R-Insertion-9
NF2226R-Insertion-9
[»] chr1 (11 HSPs)
chr1 (13-393)||(15379047-15379433)
chr1 (9-143)||(31584926-31585060)
chr1 (9-143)||(25293738-25293872)
chr1 (9-143)||(29677298-29677432)
chr1 (10-143)||(48378772-48378905)
chr1 (474-546)||(15379511-15379583)
chr1 (13-104)||(2191517-2191608)
chr1 (9-143)||(11894567-11894701)
chr1 (9-143)||(47141094-47141228)
chr1 (13-141)||(25987659-25987787)
chr1 (13-81)||(38264077-38264145)
[»] chr8 (8 HSPs)
chr8 (13-148)||(28211598-28211733)
chr8 (9-143)||(8226929-8227063)
chr8 (12-143)||(36582620-36582751)
chr8 (9-103)||(7986931-7987025)
chr8 (12-103)||(7968190-7968281)
chr8 (48-137)||(31006379-31006468)
chr8 (9-139)||(9762619-9762749)
chr8 (28-137)||(6870295-6870404)
[»] chr2 (8 HSPs)
chr2 (13-143)||(42622357-42622487)
chr2 (13-143)||(5110520-5110650)
chr2 (13-143)||(5704909-5705039)
chr2 (12-103)||(13626041-13626132)
chr2 (9-108)||(31575664-31575763)
chr2 (15-103)||(45150967-45151055)
chr2 (9-136)||(5938985-5939112)
chr2 (9-68)||(13807853-13807912)
[»] scaffold0115 (1 HSPs)
scaffold0115 (9-143)||(22282-22416)
[»] chr5 (11 HSPs)
chr5 (13-143)||(35188312-35188442)
chr5 (9-143)||(39800133-39800267)
chr5 (13-143)||(39206821-39206951)
chr5 (13-136)||(23429547-23429670)
chr5 (13-143)||(40057163-40057293)
chr5 (11-137)||(39886976-39887102)
chr5 (9-108)||(3926502-3926601)
chr5 (9-136)||(42878646-42878773)
chr5 (13-143)||(42837821-42837950)
chr5 (28-66)||(2209879-2209917)
chr5 (13-143)||(33742404-33742533)
[»] chr4 (12 HSPs)
chr4 (13-148)||(36464484-36464619)
chr4 (28-143)||(40568625-40568740)
chr4 (9-142)||(22279311-22279443)
chr4 (9-143)||(8818979-8819113)
chr4 (10-143)||(41041747-41041880)
chr4 (28-143)||(33340926-33341041)
chr4 (12-143)||(19842041-19842172)
chr4 (29-96)||(29117334-29117401)
chr4 (13-103)||(38951934-38952024)
chr4 (15-103)||(42555651-42555739)
chr4 (37-79)||(43624679-43624721)
chr4 (43-103)||(23627206-23627266)
[»] scaffold0634 (1 HSPs)
scaffold0634 (9-143)||(8959-9093)
[»] chr7 (12 HSPs)
chr7 (9-143)||(33189626-33189760)
chr7 (13-136)||(11038881-11039004)
chr7 (28-139)||(1052752-1052863)
chr7 (9-148)||(2943735-2943873)
chr7 (9-136)||(7767302-7767429)
chr7 (9-101)||(23809405-23809497)
chr7 (16-140)||(38440103-38440226)
chr7 (28-103)||(30541215-30541290)
chr7 (9-140)||(36299110-36299241)
chr7 (13-124)||(27337309-27337420)
chr7 (42-143)||(47925175-47925276)
chr7 (9-103)||(5973296-5973390)
[»] chr6 (7 HSPs)
chr6 (9-143)||(7622610-7622744)
chr6 (43-140)||(641721-641818)
chr6 (28-103)||(35167015-35167090)
chr6 (14-143)||(10788789-10788917)
chr6 (15-100)||(28582478-28582563)
chr6 (30-143)||(10408630-10408743)
chr6 (9-90)||(8577046-8577127)
[»] chr3 (9 HSPs)
chr3 (9-143)||(12149292-12149426)
chr3 (9-143)||(25874390-25874526)
chr3 (17-143)||(27926322-27926448)
chr3 (9-140)||(21288398-21288530)
chr3 (9-136)||(13826359-13826486)
chr3 (9-143)||(3778666-3778800)
chr3 (9-103)||(5295521-5295615)
chr3 (48-143)||(48251176-48251271)
chr3 (9-74)||(36585032-36585097)
[»] scaffold0155 (1 HSPs)
scaffold0155 (9-140)||(6637-6768)
[»] scaffold0057 (1 HSPs)
scaffold0057 (28-143)||(66865-66980)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 13 - 393
Target Start/End: Original strand, 15379047 - 15379433
Alignment:
Q  13 gcgggtgtggatattattaaatctgcatccgtattc------attaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaat 106  Q
    ||||||||||||| |||||||||||||||||||| |      ||||||||||||| |||||| |||||||||||| |  |||||||||||||||||||||    
T  15379047 gcgggtgtggatactattaaatctgcatccgtatccgtatccattaattagcgggcagttaaaatatccgtttatttgatccatggatatccattaaaat 15379146  T
Q  107 atatgttccgtgtccgtgaaggattttatccgcggatgcggannnnnnngcgatccctatatgagtgatatgatagttacacggctaatggaattaggga 206  Q
    ||||| || |||||| ||| ||||||||||||||| ||| ||       || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15379147 atatgctcggtgtccatgacggattttatccgcgggtgcagatttttttgccatccctatatgagtgatatgatagttacacggctaatggaattaggga 15379246  T
Q  207 tgcaatgaacaaaccaataaccaggtgaatttgaaaatttagtcccaccaattaaaacagtttcattttcttctacgttcggggtcaaaaccgaactaaa 306  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  15379247 tgcaatgaacaaaccaataaccaggtgaatttgaaaattctgtcccaccaattaaaacaatttcgttttcttctacgttcggggtcaaaaccgaactaaa 15379346  T
Q  307 ccaaacgaacccgacctttgttgcttcagctatcgaattcacatcatttaaattcgatcacccagactcaaaccaacctattatata 393  Q
    ||||||||||||||||||||||||||| ||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  15379347 ccaaacgaacccgacctttgttgcttcggctatcggattcacttcatttaaatttgatcacccagactcaaaccaacctattatata 15379433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 31585060 - 31584926
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    |||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| | | || ||||| || ||||||||||||||||||  |||    
T  31585060 atccgcgggtgtggatatcattaaatccgcatccgtatccattaattagcgggtagttaaaaaacccatttattttatccatggatatccattaaggtat 31584961  T
Q  109 atgttccgtgtccgtgaaggattttatccgcggat 143  Q
      ||||||||||| ||  |||||||||| ||||||    
T  31584960 ccgttccgtgtccatggcggattttatctgcggat 31584926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 25293872 - 25293738
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    ||||||||||| |||||  |||||||| |||||||||| ||||||||||||||||||||| |||||| ||||| || ||  ||||||||||||||  |||    
T  25293872 atccgcgggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatctgtggatatccattaaggtat 25293773  T
Q  109 atgttccgtgtccgtgaaggattttatccgcggat 143  Q
      | ||||||||||||  |||||||||||||||||    
T  25293772 ccgctccgtgtccgtggcggattttatccgcggat 25293738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 29677432 - 29677298
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    |||||||||||||||||  |||||||| |||||||||| |||||||| |||||||||||| | |||| ||||| || ||||||||||||||||||  |||    
T  29677432 atccgcgggtgtggataccattaaatccgcatccgtatccattaatttgcgggtagttaaaaaatccatttattttatccatggatatccattaaggtat 29677333  T
Q  109 atgttccgtgtccgtgaaggattttatccgcggat 143  Q
      | |||||||||||    ||||||||||||||||    
T  29677332 cagctccgtgtccgttgcagattttatccgcggat 29677298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 48378905 - 48378772
Alignment:
Q  10 tccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatata 109  Q
    |||||||| ||| |||| |||||||| ||||  |||| ||||||||||||||||||||| | |||||||||| || ||||||||||| ||||||  |||     
T  48378905 tccgcgggcgtgaatatcattaaatccgcatatgtatccattaattagcgggtagttaaaaaatccgtttattttatccatggatattcattaagctatc 48378806  T
Q  110 tgttccgtgtccgtgaaggattttatccgcggat 143  Q
     | |||||| |||||| |||||||||||||||||    
T  48378805 cgctccgtgcccgtgatggattttatccgcggat 48378772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 474 - 546
Target Start/End: Original strand, 15379511 - 15379583
Alignment:
Q  474 tctatcggctagagattcacttttaaaatgaataagtgagaaatttatggttcaaacactgatctttgcatac 546  Q
    ||||||||||||| |||||||||||| |||||||||| ||||||| | ||||||||||||| |||||||||||    
T  15379511 tctatcggctagaaattcacttttaagatgaataagtaagaaattcagggttcaaacactggtctttgcatac 15379583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 2191608 - 2191517
Alignment:
Q  13 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaa 104  Q
    ||||||| |||||  |||||||||||||| |||| ||||||||| | ||||| ||| |||||||||||| || |||||||||||||||||||    
T  2191608 gcgggtgcggataccattaaatctgcatctgtatccattaattaacaggtagataaaatatccgtttattttatccatggatatccattaaa 2191517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 11894567 - 11894701
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    |||| ||||||||||||   ||||||| |||||| ||| ||||||||||| ||||||||| | || | ||||| || ||||| ||||||||||||  |||    
T  11894567 atccacgggtgtggataccgttaaatccgcatccatatccattaattagcaggtagttaaaaaattcatttattttatccattgatatccattaaggtat 11894666  T
Q  109 atgttccgtgtccgtgaaggattttatccgcggat 143  Q
      | |||||| |||||| ||||| |||||||||||    
T  11894667 ccgctccgtgcccgtgacggattatatccgcggat 11894701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 47141094 - 47141228
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    |||||||||||  ||||  ||||||| || || | ||| ||||||||| |||||||| || | ||||| |||| || ||||||||||||||||||  |||    
T  47141094 atccgcgggtgctgataccattaaatatgtattcctatccattaattaacgggtagtaaaaaaatccgcttattttatccatggatatccattaaggtat 47141193  T
Q  109 atgttccgtgtccgtgaaggattttatccgcggat 143  Q
      | ||||||||||||  |||||||||||||||||    
T  47141194 ccgctccgtgtccgtggcggattttatccgcggat 47141228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 25987659 - 25987787
Alignment:
Q  13 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 112  Q
    |||||||||||||  ||||||||  |||  |||| ||||||||||||||||||||| | || | ||||| || ||||| ||||||||||||  ||| ||     
T  25987659 gcgggtgtggataccattaaatccacatttgtatccattaattagcgggtagttaaaaaattcatttattttatccatagatatccattaaggtatctgc 25987758  T
Q  113 tccgtgtccgtgaaggattttatccgcgg 141  Q
    | |||| | |||| ||||| |||||||||    
T  25987759 ttcgtgcctgtgacggattatatccgcgg 25987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 38264145 - 38264077
Alignment:
Q  13 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttat 81  Q
    ||||||| |||||  |||||||   ||||| ||| ||||||||||||||||||||| |||||| |||||    
T  38264145 gcgggtgcggataccattaaattcacatccatatccattaattagcgggtagttaaaatatccatttat 38264077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 28211733 - 28211598
Alignment:
Q  13 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 112  Q
    ||||||||||||| ||||||||| |||| ||||| |||||||||| |||||||||| |||||||||||| || ||||| ||||||||||||| ||| ||     
T  28211733 gcgggtgtggatactattaaatccgcattcgtatccattaattagtgggtagttaaaatatccgtttattttatccatagatatccattaaagtatctgc 28211634  T
Q  113 tccgtgtccgtgaaggattttatccgcggatgcgga 148  Q
    || |||||||||  ||||||||||||||| ||||||    
T  28211633 tctgtgtccgtggcggattttatccgcgggtgcgga 28211598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 8227063 - 8226929
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    |||||||||||||||||  |||||||| ||||||||||  |||||||||||||||||||| | |||||||||| || |||||| |||||||||||  |||    
T  8227063 atccgcgggtgtggataccattaaatccgcatccgtatctattaattagcgggtagttaaaagatccgtttattttatccatgtatatccattaaggtat 8226964  T
Q  109 atgttccgtgtccgtgaaggattttatccgcggat 143  Q
        |||||| |||||| |||||||||||||||||    
T  8226963 ccactccgtgcccgtgacggattttatccgcggat 8226929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 36582751 - 36582620
Alignment:
Q  12 cgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatg 111  Q
    |||||||||| ||| ||||||||| |||||||||| |||||||||| || ||||||| | |||||||||| || | |||||||||||||||| ||||  |    
T  36582751 cgcgggtgtgtatactattaaatccgcatccgtatccattaattagtggatagttaaaaaatccgtttattttattcatggatatccattaagatatccg 36582652  T
Q  112 ttccgtgtccgtgaaggattttatccgcggat 143  Q
     ||||||| ||||  |||||||||||||||||    
T  36582651 ctccgtgttcgtggcggattttatccgcggat 36582620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 7987025 - 7986931
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 103  Q
    ||||||||||||| |||  |||||||| |||||||||| ||||||||||| ||||||| | | |||||||||| || ||||||||||||||||||    
T  7987025 atccgcgggtgtgaataccattaaatccgcatccgtatccattaattagcaggtagttgacaaatccgtttattttatccatggatatccattaa 7986931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 7968281 - 7968190
Alignment:
Q  12 cgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 103  Q
    |||||||||| |||  |||||||| |||| ||||| ||||||||||||||||||| | | |||||||||| || ||||||||||||||||||    
T  7968281 cgcgggtgtgaataccattaaatccgcatgcgtatccattaattagcgggtagttgaaaaatccgtttattttatccatggatatccattaa 7968190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 31006379 - 31006468
Alignment:
Q  48 cattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaaggattttatcc 137  Q
    ||||||||||||| ||||||| |||||||||||| || |||||||||||||||||| ||||  | ||| ||||||||  |||||||||||    
T  31006379 cattaattagcggatagttaaaatatccgtttattttatccatggatatccattaagatatccgctccatgtccgtggcggattttatcc 31006468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 9762749 - 9762619
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    ||||| || ||||||||  || ||||| |||||| ||| ||||||||||| ||||||||| | ||| |||||| || ||||||||||||||||||  |||    
T  9762749 atccgaggatgtggataccatcaaatccgcatccatatccattaattagcaggtagttaaaaaatctgtttattttatccatggatatccattaaggtat 9762650  T
Q  109 atgttccgtgtccgtgaaggattttatccgc 139  Q
      | |||||| |||||  |||||||||||||    
T  9762649 ccgctccgtgcccgtggcggattttatccgc 9762619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 6870404 - 6870295
Alignment:
Q  28 attaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaag 127  Q
    |||||||||||||  ||||  |||||||| |||||||||||  |||  |||||| || |||||||||||||||||| ||||  |||| || ||| |||||    
T  6870404 attaaatctgcatatgtatcaattaattaacgggtagttaaattatatgtttattttatccatggatatccattaagatatccgttctgtatccttgaag 6870305  T
Q  128 gattttatcc 137  Q
    ||||||||||    
T  6870304 gattttatcc 6870295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 7e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 42622487 - 42622357
Alignment:
Q  13 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 112  Q
    ||||||| |||||  |||||||| |||||||||||||||||||| ||||||||||| |||||| ||||| || ||| ||||||||||||||  |||  ||    
T  42622487 gcgggtgcggataccattaaatccgcatccgtattcattaattaacgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgt 42622388  T
Q  113 tccgtgtccgtgaaggattttatccgcggat 143  Q
    ||||||||||||| |||||||||||||||||    
T  42622387 tccgtgtccgtgacggattttatccgcggat 42622357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 5110520 - 5110650
Alignment:
Q  13 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 112  Q
    |||||||||||||  |||||||| |||| ||||| ||||||||||||||||||||| | || | ||||| || ||||||||||||||||||  |||  |     
T  5110520 gcgggtgtggataccattaaatccgcattcgtatccattaattagcgggtagttaaaaaattcatttattttatccatggatatccattaaggtatccgc 5110619  T
Q  113 tccgtgtccgtgaaggattttatccgcggat 143  Q
    || |||||||||   ||||||||||||||||    
T  5110620 tctgtgtccgtggcagattttatccgcggat 5110650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 5704909 - 5705039
Alignment:
Q  13 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 112  Q
    |||||||||||||  ||||||||  ||||||||| ||||||||||||| ||||||| | |||| ||||| || |||| |||||| ||||||  |||  ||    
T  5704909 gcgggtgtggataccattaaatccacatccgtatccattaattagcggatagttaaaaaatccatttattttatccacggatatacattaaggtatccgt 5705008  T
Q  113 tccgtgtccgtgaaggattttatccgcggat 143  Q
    |||||| |||||  |||||||||||||||||    
T  5705009 tccgtgcccgtggcggattttatccgcggat 5705039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 13626132 - 13626041
Alignment:
Q  12 cgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 103  Q
    ||||||||| ||||  |||||||| |||||||||| ||||||||||||||||||||| | ||| |||||| || ||||| ||||||||||||    
T  13626132 cgcgggtgtagataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaatctgtttattttatccatagatatccattaa 13626041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 31575763 - 31575664
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    |||||| ||||||||||  |||||||| |||||||||| ||||||||||||||||||||  | || ||||||| || |||||| ||||||||||| ||||    
T  31575763 atccgctggtgtggatacaattaaatccgcatccgtatccattaattagcgggtagttacaaaattcgtttattttatccatgcatatccattaagatat 31575664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 45151055 - 45150967
Alignment:
Q  15 gggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 103  Q
    |||||||||||  |||||||| ||||| |||| ||||||||||||| ||||||| | |||||||||| || |||||||||||| |||||    
T  45151055 gggtgtggataccattaaatccgcatctgtatccattaattagcggatagttaaaaaatccgtttattttatccatggatatctattaa 45150967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 5938985 - 5939112
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    |||||||||||| ||||  |||||||| ||||  |||| ||||||||||||||||||||| | |||| |||||  | |||||| |||||||||||  |||    
T  5938985 atccgcgggtgtagataccattaaatccgcatttgtatccattaattagcgggtagttaaaaaatccatttattatatccatgaatatccattaaggtat 5939084  T
Q  109 atgttccgtgtccgtgaaggattttatc 136  Q
      | ||| ||||||||| ||||||||||    
T  5939085 tcgctccatgtccgtgacggattttatc 5939112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 13807853 - 13807912
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaa 68  Q
    |||||||||||||||||  ||||||||  ||||||||| ||||||| |||||||||||||    
T  13807853 atccgcgggtgtggataccattaaatccacatccgtatccattaataagcgggtagttaa 13807912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 22282 - 22416
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    ||||||||||| |||||  |||||||| |||||||||| ||||||||||||||||||||| |||||| ||||| || ||| ||||||||||||||  |||    
T  22282 atccgcgggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtat 22381  T
Q  109 atgttccgtgtccgtgaaggattttatccgcggat 143  Q
      | ||||||||||||  |||||||||||||||||    
T  22382 ccgctccgtgtccgtggcggattttatccgcggat 22416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 35188442 - 35188312
Alignment:
Q  13 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 112  Q
    |||||||||||||  | |||||| |||||||||| ||||||||||||||||||||| | |||||||||| || ||||||||||||||||||  |||  |     
T  35188442 gcgggtgtggataccactaaatccgcatccgtatccattaattagcgggtagttaaaaaatccgtttattttatccatggatatccattaaggtatccgc 35188343  T
Q  113 tccgtgtccgtgaaggattttatccgcggat 143  Q
    ||||||||||||  |||||||||||||||||    
T  35188342 tccgtgtccgtggcggattttatccgcggat 35188312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 39800267 - 39800133
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    |||||||||||  ||||  |||||||| |||||||||| ||||||||||||||||||||| |||||| ||||| || ||| ||||||||||||||  |||    
T  39800267 atccgcgggtgcagataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtat 39800168  T
Q  109 atgttccgtgtccgtgaaggattttatccgcggat 143  Q
      | ||||||||||||  |||||||||||||||||    
T  39800167 ccgctccgtgtccgtggcggattttatccgcggat 39800133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 39206951 - 39206821
Alignment:
Q  13 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 112  Q
    |||||||||||||  |||||||| |||||||||| ||||||||||||||||||||| | |||||||||| || ||||| ||||||||||||  |||  |     
T  39206951 gcgggtgtggataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaatccgtttattttatccatcgatatccattaaggtatccgc 39206852  T
Q  113 tccgtgtccgtgaaggattttatccgcggat 143  Q
    || ||| |||||  |||||||||||||||||    
T  39206851 tctgtgcccgtggcggattttatccgcggat 39206821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 23429547 - 23429670
Alignment:
Q  13 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 112  Q
    ||||||||| |||  |||||||| ||||| |||| |||||||||||| |||||||| | ||||||||||||| | |||||||||||||||| ||||  ||    
T  23429547 gcgggtgtgaataccattaaatccgcatctgtatccattaattagcgagtagttaaaaaatccgtttatgttattcatggatatccattaagatatccgt 23429646  T
Q  113 tccgtgtccgtgaaggattttatc 136  Q
    |||||||||||   ||||||||||    
T  23429647 tccgtgtccgtagcggattttatc 23429670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 40057163 - 40057293
Alignment:
Q  13 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 112  Q
    ||||||| |||||  |||||||| |||||||||| ||||||||||||||||||||| |||||  ||||| || ||| | ||||||||||||  |||  |     
T  40057163 gcgggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatctatttattttatccgtagatatccattaaggtatccgc 40057262  T
Q  113 tccgtgtccgtgaaggattttatccgcggat 143  Q
    ||||||||||||  |||||||||||||||||    
T  40057263 tccgtgtccgtggcggattttatccgcggat 40057293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 39886976 - 39887102
Alignment:
Q  11 ccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatat 110  Q
    |||||||||| ||||  || ||||||||||| |||| ||||||||||| ||||||| | |||| ||||||| || |||||| ||||||||||| ||||      
T  39886976 ccgcgggtgtagataccatgaaatctgcatctgtatccattaattagcaggtagttgaaatattcgtttattttatccatgtatatccattaagatatcc 39887075  T
Q  111 gttccgtgtccgtgaaggattttatcc 137  Q
     ||| |||| ||||  |||||||||||    
T  39887076 attctgtgttcgtggcggattttatcc 39887102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 3926502 - 3926601
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    |||||||||||||||||  |||||||| ||||||  || ||||||| |||  |||||||| | |||||||||| || ||||| |||||||||||| ||||    
T  3926502 atccgcgggtgtggataccattaaatccgcatccacatccattaataagcatgtagttaaaaaatccgtttattttatccatagatatccattaagatat 3926601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 42878773 - 42878646
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    |||||||||||||||||  |||||||| |||| | ||| |||||||||  ||||| |||| | |||||||||| || || |||||||| ||||||| |||    
T  42878773 atccgcgggtgtggataccattaaatccgcattcatatccattaattaatgggtatttaaaaaatccgtttattttatctatggatattcattaaagtat 42878674  T
Q  109 atgttccgtgtccgtgaaggattttatc 136  Q
     || || ||||| |||| ||| ||||||    
T  42878673 ctgctctgtgtctgtgacggagtttatc 42878646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 42837821 - 42837950
Alignment:
Q  13 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 112  Q
    ||||||||||||| ||||||||||||||  || | ||||| ||| ||| ||||||| | |||||||||| || ||||| |||||||||||| ||||  |     
T  42837821 gcgggtgtggatactattaaatctgcata-gtgtccattatttaacggatagttaaaaaatccgtttattttatccatagatatccattaagatatccgc 42837919  T
Q  113 tccgtgtccgtgaaggattttatccgcggat 143  Q
    || ||||| |||  || ||||||||||||||    
T  42837920 tctgtgtctgtggcgggttttatccgcggat 42837950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 2209879 - 2209917
Alignment:
Q  28 attaaatctgcatccgtattcattaattagcgggtagtt 66  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  2209879 attaaatctgcatccgtatccattaattagtgggtagtt 2209917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 33742533 - 33742404
Alignment:
Q  13 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 112  Q
    |||||||||||||  |||| ||| ||||| |||| ||||||||| | | ||||||| | |||| ||||| || |||||||||||| |||||  |||        
T  33742533 gcgggtgtggatacaattacatccgcatctgtatccattaattaac-gatagttaaaaaatccatttattttatccatggatatcaattaaggtatccac 33742435  T
Q  113 tccgtgtccgtgaaggattttatccgcggat 143  Q
    ||| |||||||| |||||||||||| |||||    
T  33742434 tccatgtccgtggaggattttatccacggat 33742404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 36464619 - 36464484
Alignment:
Q  13 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 112  Q
    ||||||| |||||| |||||||| ||||||||||  |||||||||||| ||||||| |||||||||||| || ||||||||||||| ||||  |||  |     
T  36464619 gcgggtgcggatatcattaaatccgcatccgtatctattaattagcggatagttaaaatatccgtttattttatccatggatatccgttaaggtatccgc 36464520  T
Q  113 tccgtgtccgtgaaggattttatccgcggatgcgga 148  Q
    ||||||||||||  ||||||||||||||| ||||||    
T  36464519 tccgtgtccgtggcggattttatccgcgggtgcgga 36464484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 40568740 - 40568625
Alignment:
Q  28 attaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaag 127  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||| ||||| || ||| ||||||||||||||  |||  | ||||||||||||  |    
T  40568740 attaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcg 40568641  T
Q  128 gattttatccgcggat 143  Q
     |||||||||||||||    
T  40568640 aattttatccgcggat 40568625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 22279311 - 22279443
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    ||||||||||||||||| ||||||||||||||| |||| ||||||||| ||||||||||| | |||| ||||| || ||||||||||||| ||||   ||    
T  22279311 atccgcgggtgtggatactattaaatctgcatctgtatccattaattaacgggtagttaa-aaatccatttattttatccatggatatcctttaagggat 22279409  T
Q  109 atgttccgtgtccgtgaaggattttatccgcgga 142  Q
      ||| ||||||| ||  ||||||||||||||||    
T  22279410 ccgtttcgtgtccatggcggattttatccgcgga 22279443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 8819113 - 8818979
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    ||||||||||| |||||  |||||||| |||||| ||| ||||||||| | | ||||||| |||||||||||| || |||||| |||||| ||||  |||    
T  8819113 atccgcgggtgcggataccattaaatccgcatccatatccattaattaacagatagttaaaatatccgtttattttatccatgaatatccgttaaggtat 8819014  T
Q  109 atgttccgtgtccgtgaaggattttatccgcggat 143  Q
      | | ||||||||||| |||||||||||||||||    
T  8819013 ccgcttcgtgtccgtgacggattttatccgcggat 8818979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 41041747 - 41041880
Alignment:
Q  10 tccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatata 109  Q
    ||||||||||||||||| |||||||  ||||| ||||  |||||||||||||||||||| | |||| ||||| || |||||  |||||||||||  |||     
T  41041747 tccgcgggtgtggatatcattaaattcgcatctgtatctattaattagcgggtagttaaaaaatccatttattttatccataaatatccattaaggtatc 41041846  T
Q  110 tgttccgtgtccgtgaaggattttatccgcggat 143  Q
     | |||||| |||| | |||||||||||||||||    
T  41041847 cgctccgtgcccgtaatggattttatccgcggat 41041880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 33340926 - 33341041
Alignment:
Q  28 attaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaag 127  Q
    ||||||||||||||||||| ||||||||||  ||||||||| |||||||||||| || ||||| ||| || |||||  ||| | || ||||||| | | |    
T  33340926 attaaatctgcatccgtatccattaattagtaggtagttaaaatatccgtttattttatccatagatgtctattaaggtatctatttcgtgtccataacg 33341025  T
Q  128 gattttatccgcggat 143  Q
    ||||||||||||||||    
T  33341026 gattttatccgcggat 33341041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 19842041 - 19842172
Alignment:
Q  12 cgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatg 111  Q
    |||||||||||| |  |||||||| |||||  ||| ||||||||||||  ||||||| | |||||||||| || ||||||||||||||||||  |||       
T  19842041 cgcgggtgtggaaaccattaaatccgcatctttatccattaattagcgattagttaaaaaatccgtttattttatccatggatatccattaaggtatcca 19842140  T
Q  112 ttccgtgtccgtgaaggattttatccgcggat 143  Q
     ||||||||||||  |||||||||||| ||||    
T  19842141 ctccgtgtccgtggcggattttatccgtggat 19842172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 29117334 - 29117401
Alignment:
Q  29 ttaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatat 96  Q
    ||||||| |||||||||| ||||||||||||||||||||| |||||||||||| || |||||| ||||    
T  29117334 ttaaatccgcatccgtatccattaattagcgggtagttaaaatatccgtttattttatccatgaatat 29117401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 38951934 - 38952024
Alignment:
Q  13 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 103  Q
    ||||||||| |||  |||||||| ||||| |||| ||||||||||||||||||||| | ||| |||||| || ||| || |||||||||||    
T  38951934 gcgggtgtgaataccattaaatccgcatctgtatccattaattagcgggtagttaaaaaatctgtttattttatccgtgaatatccattaa 38952024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 42555651 - 42555739
Alignment:
Q  15 gggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 103  Q
    ||||| |||||| ||||||||  ||| | ||||||||||||||  ||||||||| ||||| |||||| || | ||| ||||||||||||    
T  42555651 gggtgcggatatcattaaatccacattcatattcattaattagttggtagttaaaatatctgtttattttattcattgatatccattaa 42555739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 43624679 - 43624721
Alignment:
Q  37 gcatccgtattcattaattagcgggtagttaagatatccgttt 79  Q
    |||||||||| ||||||||||||||||||||| | ||||||||    
T  43624679 gcatccgtatccattaattagcgggtagttaaaaaatccgttt 43624721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 23627206 - 23627266
Alignment:
Q  43 gtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 103  Q
    |||| ||||||||||| ||||||||| |||| ||||||| || |||||| || ||||||||    
T  23627206 gtatccattaattagcaggtagttaaaatattcgtttattttatccatgtatttccattaa 23627266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 9093 - 8959
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    ||||||||||| |||||  |||||||| |||||||||| ||||||||| ||||||||||| |||||| ||||| || ||| ||||||||||||||  |||    
T  9093 atccgcgggtgcggataccattaaatcagcatccgtatccattaattaacgggtagttaaaatatccatttattttatccgtggatatccattaaggtat 8994  T
Q  109 atgttccgtgtccgtgaaggattttatccgcggat 143  Q
      | ||||||||||||  |||||||||||||||||    
T  8993 ccgctccgtgtccgtggcggattttatccgcggat 8959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 33189626 - 33189760
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    |||||||||||||||||  ||| |||  ||||| |||| ||||||||||||||||||||| | |||||||||| || ||||||||||||||||||  |||    
T  33189626 atccgcgggtgtggataccattgaattcgcatctgtatccattaattagcgggtagttaaaaaatccgtttattttatccatggatatccattaaggtat 33189725  T
Q  109 atgttccgtgtccgtgaaggattttatccgcggat 143  Q
      | ||||||||||||  |||||||||||||||||    
T  33189726 ccgctccgtgtccgtggcggattttatccgcggat 33189760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 11039004 - 11038881
Alignment:
Q  13 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 112  Q
    |||||||||||||  |||||||| | |||| ||||||||||||||||||||||||| | |||||||||| || |||||| |||||||||||  ||| ||     
T  11039004 gcgggtgtggataccattaaatccgtatccatattcattaattagcgggtagttaaaaaatccgtttattttatccatgaatatccattaaggtatctgc 11038905  T
Q  113 tccgtgtccgtgaaggattttatc 136  Q
    ||| ||||||||  ||||||||||    
T  11038904 tccatgtccgtggcggattttatc 11038881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 1052863 - 1052752
Alignment:
Q  28 attaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaag 127  Q
    ||||||||  ||||| ||| ||||||||||||||||||||| |||||||||||| || ||||||||||||||||||  |||  | ||||||||||||  |    
T  1052863 attaaatccacatccttatccattaattagcgggtagttaaaatatccgtttattttatccatggatatccattaaggtatccgctccgtgtccgtggcg 1052764  T
Q  128 gattttatccgc 139  Q
     |||||||||||    
T  1052763 aattttatccgc 1052752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 2943873 - 2943735
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    |||||||| ||||||||  ||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| ||  ||||  |||||||||||  |||    
T  2943873 atccgcggatgtggataccattaaatctgcattcgtat-cattaattagcgggtagttaaaatatccgtttattttacccataaatatccattaaggtat 2943775  T
Q  109 atgttccgtgtccgtgaaggattttatccgcggatgcgga 148  Q
      | ||||| ||||| | |||||||||||| || ||||||    
T  2943774 tcgctccgtatccgtaacggattttatccgtgggtgcgga 2943735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 7767302 - 7767429
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    |||||| ||||||||||  |||||||||| |||||| | |||||||||| |||||||||| | |||||||||| || | ||||||||||||||||| |||    
T  7767302 atccgcaggtgtggataccattaaatctgaatccgtgtccattaattagggggtagttaaaaaatccgtttattttattcatggatatccattaaagtat 7767401  T
Q  109 atgttccgtgtccgtgaaggattttatc 136  Q
      | ||| ||||||||  ||||||||||    
T  7767402 ccgctccatgtccgtggcggattttatc 7767429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 23809497 - 23809405
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccatt 101  Q
    |||||||||||||||||  |||||||| |||||||||| ||||||||||||||||||||| | | | |||||| || |||||| |||||||||    
T  23809497 atccgcgggtgtggataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaacctgtttattttatccatgaatatccatt 23809405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 38440226 - 38440103
Alignment:
Q  16 ggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttcc 115  Q
    ||||||||||  || ||||| |||||||||| ||||||||||||||||||||| | || ||||||| || || |||||||||||||||  ||| ||||||    
T  38440226 ggtgtggataccatcaaatccgcatccgtatccattaattagcgggtagttaaaaaattcgtttattttatctatggatatccattaaggtatctgttcc 38440127  T
Q  116 gtgtccgtgaaggattttatccgcg 140  Q
     || ||||| | |||||||||||||    
T  38440126 atgcccgtgga-gattttatccgcg 38440103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 30541290 - 30541215
Alignment:
Q  28 attaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 103  Q
    |||||||| |||||| ||| ||||||||||||||||||||| |||| ||||||| || ||||||||||||||||||    
T  30541290 attaaatcggcatccatatccattaattagcgggtagttaaaatattcgtttattttatccatggatatccattaa 30541215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 36299110 - 36299241
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    ||||| ||||| |||||  ||||||||  |||  |||| ||||||||||||||||||||| |||| | ||||| || |||||||||||||||||| ||||    
T  36299110 atccgtgggtgcggataccattaaatcaacatttgtatccattaattagcgggtagttaaaatattcatttattttatccatggatatccattaagatat 36299209  T
Q  109 atgttccgtgtccgtgaaggattttatccgcg 140  Q
      | ||||||||||||   |||||||||||||    
T  36299210 ccgctccgtgtccgtggcagattttatccgcg 36299241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 27337309 - 27337420
Alignment:
Q  13 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 112  Q
    ||||||| |||||  |||||||| ||||||||||  |||||||||||||||||||| |||||| ||||| || | | ||||||||||||||  |||  |     
T  27337309 gcgggtgcggataccattaaatccgcatccgtatctattaattagcgggtagttaaaatatccatttattttattcgtggatatccattaaggtatccgc 27337408  T
Q  113 tccgtgtccgtg 124  Q
    ||||||||||||    
T  27337409 tccgtgtccgtg 27337420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 47925175 - 47925276
Alignment:
Q  42 cgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaaggattttatccgcgg 141  Q
    ||||| |||||||||  |||||||||| |||||  ||||| || || | |||||||||||||  |||  ||||||||||||||  |||||||||||||||    
T  47925175 cgtatccattaattaatgggtagttaaaatatctatttattttatctaaggatatccattaaggtatccgttccgtgtccgtggcggattttatccgcgg 47925274  T
Q  142 at 143  Q
    ||    
T  47925275 at 47925276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 5973296 - 5973390
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 103  Q
    ||||||||||||| |||  |||||||| ||||| |||| |||||||||| || ||||||| | || ||||||| || || |||||| ||||||||    
T  5973296 atccgcgggtgtgaataccattaaatccgcatctgtatccattaattagtggatagttaaaaaattcgtttattttatcaatggatttccattaa 5973390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 7622610 - 7622744
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    |||||||||||||||||  |||||||| |||||||||| ||||||||||||||||  ||| | |||||||||| || ||||||||||||||||||  |||    
T  7622610 atccgcgggtgtggataccattaaatccgcatccgtatccattaattagcgggtaaataaaaaatccgtttattttatccatggatatccattaaggtat 7622709  T
Q  109 atgttccgtgtccgtgaaggattttatccgcggat 143  Q
      | |||| |||||||  |||||||||||||||||    
T  7622710 ccgctccgcgtccgtggcggattttatccgcggat 7622744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 641818 - 641721
Alignment:
Q  43 gtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaaggattttatccgcg 140  Q
    |||| ||||||||||||| ||||||| |||||||||||| || |||||||||||||||||||||||  | ||||||||||||  | ||||||||||||    
T  641818 gtatccattaattagcggatagttaaaatatccgtttattttatccatggatatccattaaaatatccgctccgtgtccgtggtgaattttatccgcg 641721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 35167090 - 35167015
Alignment:
Q  28 attaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 103  Q
    ||||||||  |||||||||  |||||||||||||||||||| |||||||||||| || |||||||||||| |||||    
T  35167090 attaaatccacatccgtatcaattaattagcgggtagttaaaatatccgtttattttatccatggatatctattaa 35167015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 10788789 - 10788917
Alignment:
Q  14 cgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgtt 113  Q
    |||||||||||| |||||||||  |||  |||| ||||||||||| ||||||||| | || ||||||| || ||||||||||||||||||  |||  | |    
T  10788789 cgggtgtggatactattaaatccacatttgtatccattaattagcaggtagttaa-aaattcgtttattttatccatggatatccattaaggtatccgct 10788887  T
Q  114 ccgtgtccgtgaaggattttatccgcggat 143  Q
    ||||| |||||  | |||||||||||||||    
T  10788888 ccgtgcccgtggcgaattttatccgcggat 10788917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 28582478 - 28582563
Alignment:
Q  15 gggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccat 100  Q
    ||||||||||| ||||||||| | ||  |||| || |||||| ||||||||||| |||||||||||| || |||||||||||||||    
T  28582478 gggtgtggatactattaaatccgtatttgtatccactaattaacgggtagttaaaatatccgtttattttatccatggatatccat 28582563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 10408743 - 10408630
Alignment:
Q  30 taaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaagga 129  Q
    |||||||||||| ||||  | || ||||||||||||| | |||||||||||| || |||||| |||||||||||  |||  | ||||| ||||||  |||    
T  10408743 taaatctgcatctgtatctactatttagcgggtagttgaaatatccgtttattttatccatgaatatccattaaggtatccgctccgtttccgtggcgga 10408644  T
Q  130 ttttatccgcggat 143  Q
    ||||||| ||||||    
T  10408643 ttttatctgcggat 10408630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 8577046 - 8577127
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccat 90  Q
    |||| ||||||||||||  |||||||||||||| |||| ||||||||| ||| | ||||| | | |||||||| || |||||    
T  8577046 atccacgggtgtggataccattaaatctgcatctgtatccattaattaacggttggttaaaaaaaccgtttattttatccat 8577127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 12149292 - 12149426
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    ||||||||||| |||||  |||||||| |||||||||| ||||||||| ||||||||||| |||||| ||||| || ||| ||||||||||||||  |||    
T  12149292 atccgcgggtgcggataccattaaatcagcatccgtatccattaattaacgggtagttaaaatatccatttattttatccgtggatatccattaaggtat 12149391  T
Q  109 atgttccgtgtccgtgaaggattttatccgcggat 143  Q
      | ||||||||||||  |||||||||||||||||    
T  12149392 ccgctccgtgtccgtggcggattttatccgcggat 12149426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 25874526 - 25874390
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgt--tttccatggatatccattaaaat 106  Q
    |||||||||||||||||  |||||||| |||||||||| ||||||||||||||||||||| | |||||||||| |  | ||||||||||||||||||  |    
T  25874526 atccgcgggtgtggataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaatccgtttattttatatccatggatatccattaaggt 25874427  T
Q  107 atatgttccgtgtccgtgaaggattttatccgcggat 143  Q
    ||  | ||||||  ||||| |||||||||||||||||    
T  25874426 atccgctccgtgctcgtgacggattttatccgcggat 25874390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 27926448 - 27926322
Alignment:
Q  17 gtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccg 116  Q
    |||||||||  |||||||| |||||||||| ||||||||||||||||||||| | |||  ||||| || ||||||||||||||||||  |||  | ||||    
T  27926448 gtgtggataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaatctatttattttatccatggatatccattaaggtatccgctccg 27926349  T
Q  117 tgtccgtgaaggattttatccgcggat 143  Q
    ||||||||  |||||||||||||||||    
T  27926348 tgtccgtggcggattttatccgcggat 27926322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 21288398 - 21288530
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagtt-aagatatccgtttatgttttccatggatatccattaaaata 107  Q
    |||||||||||||||||  |||||||| |||||| ||| ||||||||||||||||||| || | |||||||||| || ||||| |||||||||||| |||    
T  21288398 atccgcgggtgtggataccattaaatccgcatccctatccattaattagcgggtagttaaaaaaatccgtttattttatccatagatatccattaagata 21288497  T
Q  108 tatgttccgtgtccgtgaaggattttatccgcg 140  Q
    |  | |||||| |||||| | ||||||||||||    
T  21288498 tccgctccgtgcccgtgacgtattttatccgcg 21288530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 13826359 - 13826486
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    |||||||||||||||||  |||||||||| |||| ||| |||||||||||| |||||||| | |||||||||| || |||||||||||| |||||  |||    
T  13826359 atccgcgggtgtggataccattaaatctgtatccatatccattaattagcgagtagttaaaaaatccgtttattttatccatggatatctattaatgtat 13826458  T
Q  109 atgttccgtgtccgtgaaggattttatc 136  Q
     || |||||| |||||  ||||||||||    
T  13826459 ctgctccgtgcccgtggcggattttatc 13826486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 3778800 - 3778666
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    |||||||||| ||||||   ||||||| ||||| |||| ||||||||||||| ||||||| | ||| |||||| || | ||||||||||||||||  |||    
T  3778800 atccgcgggtatggataccgttaaatccgcatctgtatccattaattagcggatagttaaaaaatctgtttattttattcatggatatccattaaggtat 3778701  T
Q  109 atgttccgtgtccgtgaaggattttatccgcggat 143  Q
      | |||||| |||||  |||||||||||||||||    
T  3778700 ccgctccgtgcccgtggcggattttatccgcggat 3778666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 5295521 - 5295615
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 103  Q
    |||||| ||||| ||||  |||||||||||||| |||| |||||||||| |||||||||| | || ||||||| || | ||||||||||||||||    
T  5295521 atccgcaggtgtagataccattaaatctgcatctgtatccattaattagtgggtagttaaaaaatacgtttattttattcatggatatccattaa 5295615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 48251271 - 48251176
Alignment:
Q  48 cattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaaggattttatccgcggat 143  Q
    ||||||||||| | || |||| |||||| ||||| || ||||| ||||||||||||| ||| || ||||| |||||||  ||||||||||||||||    
T  48251271 cattaattagcagttaattaaaatatccatttattttatccatagatatccattaaagtatctgctccgtatccgtgacagattttatccgcggat 48251176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 36585032 - 36585097
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatc 74  Q
    ||||||||||| |||||  ||| ||||||||||||||| ||||||||||||||||| ||| |||||    
T  36585032 atccgcgggtgcggataccatttaatctgcatccgtatccattaattagcgggtagataaaatatc 36585097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 6768 - 6637
Alignment:
Q  9 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 108  Q
    |||| ||||||||||||  |||||||| ||||| |||| |||||||||  || ||||||  | |||| ||||| || ||||||||||| |||||| ||||    
T  6768 atccacgggtgtggataccattaaatccgcatctgtatccattaattaatggttagttagaaaatccatttattttatccatggatattcattaagatat 6669  T
Q  109 atgttccgtgtccgtgaaggattttatccgcg 140  Q
      |||||||| |||||| ||||||||||||||    
T  6668 tcgttccgtgcccgtgacggattttatccgcg 6637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 66865 - 66980
Alignment:
Q  28 attaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaag 127  Q
    ||||||| || |||| ||||||| |||||| |||||| ||| |||||||||||| || ||||||||||||||||||  |||  | |||||||| ||||      
T  66865 attaaatatgtatccatattcatcaattagagggtagataaaatatccgtttattttatccatggatatccattaaggtatccgctccgtgtctgtgaca 66964  T
Q  128 gattttatccgcggat 143  Q
    |||||||||| |||||    
T  66965 gattttatccacggat 66980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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