View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2227_low_1 (Length: 395)
Name: NF2227_low_1
Description: NF2227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2227_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 12 - 395
Target Start/End: Complemental strand, 5563163 - 5562779
Alignment:
| Q |
12 |
tactacatacgtaccaggccagaagcaaaagttcaaagcatccaaaacaaacaagtactgaacagtgagaggaccattatcaaaataatgaatcccttca |
111 |
Q |
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| T |
5563163 |
tactacatacgtaccaggccagaagcaaaagttcaaagcatccaaaacaaacaagtactgaacagtgagaggaccattatcaaaataatgaatcccttca |
5563064 |
T |
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| Q |
112 |
aaatcccattcaactttcggaatagaatcaatggtgctcactactttctcaatccctgaagnnnnnnnnn-cataatcacaaagcataaacgcaacgcat |
210 |
Q |
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| T |
5563063 |
aaatcccattcaactttcggaatagaatcaatggtgctcactactttctcaatccctgaaaaaaaaaaacacataatcacaaagcataaacgcaacgcat |
5562964 |
T |
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| Q |
211 |
ttgaatatgagaaagatacagcgtaagtcgaacgaagaatgaacctgaagagtcaacaacgacatgagaggagtgactagcgacccaagcagaggttgct |
310 |
Q |
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| T |
5562963 |
ttgaatatgagaaagatacagcgttagtcgaacgaagaatgaacctgaggagtcaacaacgacatgagaggagtggctagcgacccaagcagaggttgat |
5562864 |
T |
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| Q |
311 |
cttacgtcgtccatggagttttcacaatgctgctgcgccgtttcaatgtgatgaatgaaccctaaaaattaaccaaagctttatg |
395 |
Q |
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| T |
5562863 |
cttacgtcgtccatggagttttcacaatgctgctgcgccgtttcaatgtgatgaatgaaccctaaaaattaaccgaagctttatg |
5562779 |
T |
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