View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2227_low_2 (Length: 226)
Name: NF2227_low_2
Description: NF2227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2227_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 40532156 - 40531960
Alignment:
| Q |
14 |
atatgaacaacattaacaatttgtctacaaattgaagcggcagctctttcactatactttcccttggcaataatcctgtcaaaaagttcaccaccagcac |
113 |
Q |
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| T |
40532156 |
atatgaacaacattaacaatttgtctacaaattgaagctgcagctctttcactatactttcccttagcaataatcctgtcaaaaagttcaccaccagcac |
40532057 |
T |
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| Q |
114 |
aaagttccattacaacatgaactgaatttttatcctcataagcacctttaaactcaacaatatttggttgtccactcatatgttgcatgatttgaat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40532056 |
aaagttccattacaacatgaactgaatttttatcctcataagcacctttaaactcaacaatatttggttgtccactcatatgttgcatgatttgaat |
40531960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 40537121 - 40536925
Alignment:
| Q |
14 |
atatgaacaacattaacaatttgtctacaaattgaagcggcagctctttcactatactttcccttggcaataatcctgtcaaaaagttcaccaccagcac |
113 |
Q |
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| T |
40537121 |
atatgaacaacattaacaatttgtctaaaaattgaagctgcatctctttcactatatttccctttggcaataatcgtatcataaagttcaccaccagcac |
40537022 |
T |
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| Q |
114 |
aaagttccattacaacatgaactgaatttttatcctcataagcacctttaaactcaacaatatttggttgtccactcatatgttgcatgatttgaat |
210 |
Q |
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| T |
40537021 |
aaagttccataacaacatgaactgaattttcatcctcataagcacctttaaactcaacaatatttggttgtccactcatatgctgcatgatttgaat |
40536925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 2478800 - 2478709
Alignment:
| Q |
83 |
ataatcctgtcaaaaagttcaccaccagcacaaagttccattacaacatgaactgaatttttatcctcataagcacctttaaactcaacaat |
174 |
Q |
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| T |
2478800 |
ataatcctatcaaaaagctcaccaccagcacaaagctccatgataagattaaccgaatgacgatcctcataagcacctttaagctcaacaat |
2478709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 20501476 - 20501280
Alignment:
| Q |
14 |
atatgaacaacattaacaatttgtctacaaattgaagcggcagctctttcactatactttcccttggcaataatcctgtcaaaaagttcaccaccagcac |
113 |
Q |
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|||| ||||||||||||||| ||||||||||| ||||| |||||| |||||||||| | ||| || ||||| ||||| |||||||||||||||||||||| |
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| T |
20501476 |
atattaacaacattaacaatctgtctacaaatagaagcagcagctttttcactataatgtcctttagcaatgatcctatcaaaaagttcaccaccagcac |
20501377 |
T |
|
| Q |
114 |
aaagttccattacaacatgaactgaatttttatcctcataagcacctttaaactcaacaatatttggttgtccactcatatgttgcatgatttgaat |
210 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||| ||||| |
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| T |
20501376 |
aaagttccataacaacatgaactgaattcctatcctcataagctcctttaaattcaacaatatttggttgaccactcaaatgttgcatgatctgaat |
20501280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 55168201 - 55168098
Alignment:
| Q |
80 |
gcaataatcctgtcaaaaagttcaccaccagcacaaagttccattacaacatgaactgaatttttatcctcataagcacctttaaactcaacaatatttg |
179 |
Q |
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||||||||||| ||||| | ||||||||||||||||||||||| |||| ||| || || | |||||||| ||||||||||||||||||||||||| | |
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| T |
55168201 |
gcaataatcctatcaaacaactcaccaccagcacaaagttccatcacaagatgcacagagaatctatcctcaaaagcacctttaaactcaacaatattcg |
55168102 |
T |
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| Q |
180 |
gttg |
183 |
Q |
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|||| |
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| T |
55168101 |
gttg |
55168098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 41623114 - 41623194
Alignment:
| Q |
82 |
aataatcctgtcaaaaagttcaccaccagcacaaagttccattacaacatgaactgaatttttatcctcataagcaccttt |
162 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||| |||| | ||| || | ||||||||||||||||||||| |
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| T |
41623114 |
aataatccgatcaaaaagttcaccaccagcacaaagctccataacaaggttaacagagtgtttatcctcataagcaccttt |
41623194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 8404846 - 8404801
Alignment:
| Q |
144 |
tatcctcataagcacctttaaactcaacaatatttggttgtccact |
189 |
Q |
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| T |
8404846 |
tatcctcataagcacccttgaactcaactatgtttggttgtccact |
8404801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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