View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2228_high_12 (Length: 270)
Name: NF2228_high_12
Description: NF2228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2228_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 4809589 - 4809824
Alignment:
| Q |
20 |
agtatggttaataaggagaatttgagacataattaatgctgtcagtttggaagttaatgctaatgcaaatgagaacataaagagttctctgaggcaacat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4809589 |
agtatggttaataaggagaatttgagacataattaatgctgtcagtttggaagttaatgctaatgcaaatgagaacataaagagtcctctgaggcaacat |
4809688 |
T |
|
| Q |
120 |
gagaccatgttagaaagcacaagatcatggagatgaatattcatcttatatgtaaaataagtttgagaacttgatagagataaatactcataagagaaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4809689 |
gagaccatgttagaaagcacaagatcatggagatgaatattcatcttatatgtaaaataagtttgagaacttgatagagataaatactcataagagaaat |
4809788 |
T |
|
| Q |
220 |
ttaagaaacattcaccaatatgtgatagtagcatgt |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
4809789 |
ttaagaaacattcaccaatatgtgatagtagcatgt |
4809824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 4816919 - 4816951
Alignment:
| Q |
66 |
ttggaagttaatgctaatgcaaatgagaacata |
98 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
4816919 |
ttggaagttactgctaatgcaaatgagaacata |
4816951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 27511103 - 27511197
Alignment:
| Q |
19 |
cagtatggttaataaggagaatttgagacataattaatgctgtcagtttggaagttaatgctaatgcaaatgagaacataaagagttctctgaggcaac |
117 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
27511103 |
cagtatggtttataaggagaatttgaggc----ttattgctgtcagtttggaagttactgctaatgcaaatgagaacataaagagtcctttgaggcaac |
27511197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 25219358 - 25219290
Alignment:
| Q |
127 |
tgttagaaagcacaagatcatggagatgaatattcatcttatatgtaaaataagtttgagaacttgata |
195 |
Q |
| |
|
||||| ||| |||| ||||| ||||||||||||||||| |||| | |||||||||||||| ||||||| |
|
|
| T |
25219358 |
tgttataaatcacatgatcaaagagatgaatattcatctcatatttgaaataagtttgagagcttgata |
25219290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University