View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2228_high_15 (Length: 242)
Name: NF2228_high_15
Description: NF2228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2228_high_15 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 15489470 - 15489242
Alignment:
| Q |
14 |
tcatcaggactgatatacactggaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnnntgtattactcaagtaattaca |
113 |
Q |
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| T |
15489470 |
tcatcagtactgatatacactgaaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccaaaaaaaatgtattactcaagtaattaca |
15489371 |
T |
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| Q |
114 |
ctgttgtaccaatctattgtttttgttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcaagaaaaagatcataga |
213 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15489370 |
ctgttgtaccaatctattgtttctgttgaataacattgcagttgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcataga |
15489271 |
T |
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| Q |
214 |
tggagtcttaattgtttccacatttattt |
242 |
Q |
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| T |
15489270 |
tggaggcttaattgcttccacatttattt |
15489242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 15431075 - 15430847
Alignment:
| Q |
14 |
tcatcaggactgatatacactggaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnnntgtattactcaagtaattaca |
113 |
Q |
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||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15431075 |
tcatcagtactgatatacactgaaaatcatgttgtagcaaaaatctaaacaagacatgttcaacttcatccaaaaataatgtattactcaagtaattaca |
15430976 |
T |
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| Q |
114 |
ctgttgtaccaatctattgtttttgttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcaagaaaaagatcataga |
213 |
Q |
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| T |
15430975 |
ctgttgtaccaatctattgtttctgttgaataacattgcagttgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcataga |
15430876 |
T |
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| Q |
214 |
tggagtcttaattgtttccacatttattt |
242 |
Q |
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| T |
15430875 |
tggaggcttaattgcttccacatttattt |
15430847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 15557511 - 15557283
Alignment:
| Q |
14 |
tcatcaggactgatatacactggaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnnntgtattactcaagtaattaca |
113 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15557511 |
tcatcagtactgatatacactgaaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccaaaaaaaatgtattactcaagtaattaca |
15557412 |
T |
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| Q |
114 |
ctgttgtaccaatctattgtttttgttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcaagaaaaagatcataga |
213 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15557411 |
ctgttgtaccaatctattgtttctgttgaataacattgcagtcgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcataga |
15557312 |
T |
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| Q |
214 |
tggagtcttaattgtttccacatttattt |
242 |
Q |
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| T |
15557311 |
tggaggcttaattgcttccacatttattt |
15557283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 15450535 - 15450307
Alignment:
| Q |
14 |
tcatcaggactgatatacactggaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnnntgtattactcaagtaattaca |
113 |
Q |
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||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
15450535 |
tcatcagtactgatatacactgaaaatcatgttgtagcaaaaatctaaacaagacatgttcaacttcatccaaaaagaatgtattactcaagtaattata |
15450436 |
T |
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| Q |
114 |
ctgttgtaccaatctattgtttttgttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcaagaaaaagatcataga |
213 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15450435 |
ctgttgtaccaatctattgtttctgttgaataacattgcagtcgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcataga |
15450336 |
T |
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| Q |
214 |
tggagtcttaattgtttccacatttattt |
242 |
Q |
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| T |
15450335 |
tggaggcttaattgcttccaaatttattt |
15450307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 16944099 - 16943874
Alignment:
| Q |
14 |
tcatcaggactgatatacactggaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnnntgtattactcaagtaattaca |
113 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16944099 |
tcatcagtactgatatacactgaaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccaaaaaaaatgtattactcaagtaattact |
16944000 |
T |
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| Q |
114 |
ctgttgtaccaatctattgtttttgttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcaagaaaaagatcataga |
213 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16943999 |
ctgt---accaatctattgtttctgttgaataacattgcagtcgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcataga |
16943903 |
T |
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| Q |
214 |
tggagtcttaattgtttccacatttattt |
242 |
Q |
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||||| |||||||| ||| |||||||||| |
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| T |
16943902 |
tggaggcttaattgcttctacatttattt |
16943874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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