View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2228_high_9 (Length: 324)
Name: NF2228_high_9
Description: NF2228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2228_high_9 |
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| [»] scaffold0777 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 34694798 - 34694501
Alignment:
| Q |
11 |
cagagatattgcgggtgaattaggcaccatcacggtcccatcattaatattggagattccaata---ttgttagaggaagataatgaagatgagttgggt |
107 |
Q |
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| T |
34694798 |
cagagatattgcgggtgaattaggcaccatcaccatcccatcattaatattggagattccaataatattgttagaggaagatgatgaagatgagttgggt |
34694699 |
T |
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| Q |
108 |
ggtggtgtggtgatttgtgggagagagctatttgaagctgctttttgttgtgttcccggtttctcgttatagggtactttgttggttttgcttctgtact |
207 |
Q |
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| T |
34694698 |
ggtggtgtgttgatttgtgggagagagctatttgaagctgctttttgttgtgttcccggtttctcgttatagggtactttgttggttttgcttctgtact |
34694599 |
T |
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| Q |
208 |
tgcggttttgaaaccagtaaaagacactggaatcaccaacttggccaaattcttctaattgttcacgtatcttcttaatctcatctctacgtggattc |
305 |
Q |
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| T |
34694598 |
tgcggttttgaaaccagtaaaagacactggaatcaccaacttggccaaattcttctaattgttcacgtatcttcttaatctcatctctacgtggattc |
34694501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 34686872 - 34686568
Alignment:
| Q |
11 |
cagagatattgcgggtgaattaggcaccatcacggtcccatcattaatattggagattccaata---ttgttagaggaagataatgaagatgagttgggt |
107 |
Q |
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| T |
34686872 |
cagagagattgcaggtgaattaggcaccatcaccgtcccatcattaatattggagattccaataatattgttagaggaagatgatgaagatgagttgggt |
34686773 |
T |
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| Q |
108 |
ggtggtgtggtgatttgtgggagagagctatt------tgaagctgctttttgttgtgttcccggtttctcgttatagggtactttgttggttttgcttc |
201 |
Q |
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| T |
34686772 |
ggtggtgtggtgatttgtgggagagagttattaagagctggatctgcaattggttgtctttttgatttcttggggtagggtgcttttttgtttttgcctt |
34686673 |
T |
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| Q |
202 |
tgtacttgcggttttgaaaccagtaaaagacactggaatcaccaacttggccaaattcttctaattgttcacgtatcttcttaatctcatctctacgtgg |
301 |
Q |
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| T |
34686672 |
tggacttgcggttttgaaaccagtaaaagacactcgcatcaccaatttgtccaaattcttgtaattgttctcgtatcttcttgatttcatctacaggtgg |
34686573 |
T |
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| Q |
302 |
attct |
306 |
Q |
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| T |
34686572 |
attct |
34686568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 8284527 - 8284446
Alignment:
| Q |
205 |
acttgcggttttgaaaccagtaaaagacactggaatcaccaacttggccaaattcttctaattgttcacgtatcttcttaat |
286 |
Q |
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| T |
8284527 |
acttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttgtaattgttcacgtatcttcgtaat |
8284446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 6131 - 6059
Alignment:
| Q |
196 |
tgcttctgtacttgcggttttgaaaccagtaaaagacactggaatcaccaacttggccaaattcttctaattg |
268 |
Q |
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||||| || ||||||||||||||||| |||||||||| || | |||||||| ||| | |||| ||| |||||| |
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| T |
6131 |
tgcttatggacttgcggttttgaaacgagtaaaagacgctagcatcaccaagttgcctaaatacttgtaattg |
6059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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