View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2228_low_10 (Length: 362)
Name: NF2228_low_10
Description: NF2228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2228_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 610069 - 609892
Alignment:
| Q |
18 |
tgttattgtttcttaattcccttgcatgccatgtttctttcttacattctttgttcttacattcttttacgttgtttgaattggggagagtgagtgagtg |
117 |
Q |
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| T |
610069 |
tgttattgtttcttaattcccttgcatgccatgtttctttcttacattctttgttcttacattcttttacgttgtttgaattggggtgagtgag----tg |
609974 |
T |
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| Q |
118 |
agagtgttgttgagcttaatttgac-nnnnnnntaccttcatagaagaaattaaactactgtctcctttaaaagcttcctca |
198 |
Q |
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| T |
609973 |
agagtgttgttgagcttaatttgacaaaaaaaataccttcatagaagaaattaaactactgtctcctttaaaagcttcctca |
609892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 609769 - 609692
Alignment:
| Q |
271 |
agggtgaattgaaaatttagtacaacatgtgtgttggtgaagatttacacaagatcataggattctattcttttgttt |
348 |
Q |
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| T |
609769 |
agggtgaattgaaaatttagtacaacatgtgtgttggtgaagatttacacaagatcataggatcctattcttttgttt |
609692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 609819 - 609778
Alignment:
| Q |
271 |
agggtgaattgaaaatttagtacaacatgtgtgttggtgaag |
312 |
Q |
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| T |
609819 |
agggtgaattgaaaatttagtacaacatgtgtgttggtgaag |
609778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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