View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2228_low_11 (Length: 358)
Name: NF2228_low_11
Description: NF2228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2228_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 114 - 342
Target Start/End: Complemental strand, 35928787 - 35928559
Alignment:
| Q |
114 |
ccttgaaaacacaacatgacatcagaagaaatgatataatatttctatcaaaatatagaaaggaatgatatattattagttaatattttgattgatgaca |
213 |
Q |
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| T |
35928787 |
ccttgaaaacacaacatgacatcagaagaaatgatatattatttctatcaaaataaagaaaggaatgatatattattagttaatattttgattgatgaca |
35928688 |
T |
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| Q |
214 |
taacttgattttcatagtagtcaaacatggtagggtagcacatttttacataagaacaaaatattattttcatattgaaaatgaaagaacatagtgcaac |
313 |
Q |
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| T |
35928687 |
taacttgattttcatagtagtcaaacatggtagggtagcacatttttacataagaacaaaatattatttttatattgaaaatgaaagaacatagtgaaac |
35928588 |
T |
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| Q |
314 |
ctggttattaatttattttgagcatcatg |
342 |
Q |
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| T |
35928587 |
ctggttattaatttattttgagcatcatg |
35928559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 35915725 - 35915684
Alignment:
| Q |
200 |
tttgattgatgacataacttgattttcatagtagtcaaacat |
241 |
Q |
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| T |
35915725 |
tttgattgatgacataactacattttcatagtagtgaaacat |
35915684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 35922085 - 35922044
Alignment:
| Q |
201 |
ttgattgatgacataacttgattttcatagtagtcaaacatg |
242 |
Q |
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| T |
35922085 |
ttgattgatgacataagttcattttcatagtagtgaaacatg |
35922044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 35940852 - 35940804
Alignment:
| Q |
185 |
attattagttaatattttgattgatgacataacttgattttcatagtagt |
234 |
Q |
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| T |
35940852 |
attatcagttaatattt-gattgatgacataacttcatattcatagtagt |
35940804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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