View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2228_low_16 (Length: 295)

Name: NF2228_low_16
Description: NF2228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2228_low_16
NF2228_low_16
[»] chr6 (1 HSPs)
chr6 (1-117)||(8159197-8159313)
[»] chr8 (8 HSPs)
chr8 (3-177)||(44301348-44301524)
chr8 (3-177)||(43896007-43896178)
chr8 (167-280)||(44301208-44301322)
chr8 (3-177)||(44306460-44306632)
chr8 (3-177)||(44312248-44312411)
chr8 (162-258)||(44312129-44312226)
chr8 (162-258)||(43895847-43895943)
chr8 (162-202)||(44306353-44306394)
[»] chr3 (2 HSPs)
chr3 (6-177)||(4084120-4084287)
chr3 (162-204)||(4084056-4084099)
[»] chr4 (1 HSPs)
chr4 (4-167)||(18701618-18701781)
[»] chr5 (1 HSPs)
chr5 (34-143)||(35856948-35857053)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 8159197 - 8159313
Alignment:
Q  1 ccgatgggtctgttagatatataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattg 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159197 ccgatgggtctgttagatatataatgacttctgctgctgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattg 8159296  T
Q  101 attcattccagagaaat 117  Q
    |||||||| ||||||||    
T  8159297 attcattctagagaaat 8159313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 3 - 177
Target Start/End: Complemental strand, 44301524 - 44301348
Alignment:
Q  3 gatgggtctgttagatatataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgat 102  Q
    ||||||||||||||||||| |||| |||||||   |||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  44301524 gatgggtctgttagatatacaatgtcttctgc---cgatgttcctacttattcggtgtcaaaagattctggagagaaattttcaaatggtgtgaattgat 44301428  T
Q  103 tcattcca-----gagaaatgatcatacttacccagttggtttggtctgttaactttgctatgttttgttgcttaattat 177  Q
    ||||||||     | ||||||||| ||||||||||||| ||||||  ||||| |||||||||||||||||||||| ||||    
T  44301427 tcattccattccagtgaaatgatcctacttacccagtttgtttggcttgttagctttgctatgttttgttgcttatttat 44301348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 3 - 177
Target Start/End: Complemental strand, 43896178 - 43896007
Alignment:
Q  3 gatgggtctgttagatatataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgat 102  Q
    ||||||||||||||||||| ||||||||||||   ||||||||||| ||||||  ||||| |||||| ||||||||||||||||||||||||| || |||    
T  43896178 gatgggtctgttagatatacaatgacttctgc---cgatgttcctgattattctatctcataagattctggagagaaattttcaaatggtgtggatggat 43896082  T
Q  103 tcattccagagaaatgatcatacttacccagttggtttggtctgttaactttgctatgttttgttgcttaattat 177  Q
    |||||| || ||| ||||| |||||||||||||| |||||  ||||| |||||||||| ||||||||||| ||||    
T  43896081 tcattctagggaagtgatcctacttacccagttgctttggcttgttagctttgctatggtttgttgcttatttat 43896007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 167 - 280
Target Start/End: Complemental strand, 44301322 - 44301208
Alignment:
Q  167 tgcttaattattgatctctgat-agttagtagttactcagnnnnnnnattttgttctgcatttaatacttgatcctatctatgctgtcaagataagttta 265  Q
    |||||||||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44301322 tgcttaattattgatctctgattagttagtagttactcagtttttttattttgttctgcatttaatacttgatcctatctatgctgtcaagataagttta 44301223  T
Q  266 acatttagtgcaaat 280  Q
    |||||||||||||||    
T  44301222 acatttagtgcaaat 44301208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 3 - 177
Target Start/End: Complemental strand, 44306632 - 44306460
Alignment:
Q  3 gatgggtctgttagatatataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaatttt-caaatggtgtgaattga 101  Q
    ||||||||||||||||||| ||||||||||||   |||||||||| ||||||| |||||| |||||| ||||||||  |||| |||||||||||||| ||    
T  44306632 gatgggtctgttagatatacaatgacttctgc---cgatgttcctacttattctgtctcataagattctggagagagttttttcaaatggtgtgaatgga 44306536  T
Q  102 ttcattccagagaaatgatcatacttacccagttggtttggtctgttaactttgctatgttttgttgcttaattat 177  Q
    ||||||| || ||||||||| |||||||||||||| |||||  ||||| |||||||||| ||||||||||| ||||    
T  44306535 ttcattctagggaaatgatcctacttacccagttgctttggcttgttagctttgctatggtttgttgcttatttat 44306460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 3 - 177
Target Start/End: Complemental strand, 44312411 - 44312248
Alignment:
Q  3 gatgggtctgttagatatataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgat 102  Q
    ||||||||||||||||||||||||||||||||   ||||||||        || |||||||||| || |||||||||||||||||||||||||||| |||    
T  44312411 gatgggtctgttagatatataatgacttctgc---cgatgttc--------tccgtctcaaaagtttctggagagaaattttcaaatggtgtgaatggat 44312323  T
Q  103 tcattccagagaaatgatcatacttacccagttggtttggtctgttaactttgctatgttttgttgcttaattat 177  Q
    |||||| |||||| ||||| |||||  |||||||||||||  |||||||| |||| || ||||||||||| ||||    
T  44312322 tcattcaagagaattgatcctacttcgccagttggtttggcttgttaactatgctttggtttgttgcttatttat 44312248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 258
Target Start/End: Complemental strand, 44312226 - 44312129
Alignment:
Q  162 tttgttgcttaattattgatctctga-tagttagtagttactcagnnnnnnnattttgttctgcatttaatacttgatcctatctatgctgtcaagat 258  Q
    |||||||||||||||||||||||||| |||||||||||||||||         || |||||||||||||| | |||||||||||| ||||||||||||    
T  44312226 tttgttgcttaattattgatctctgattagttagtagttactcattttttttgttgtgttctgcatttaacagttgatcctatctctgctgtcaagat 44312129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 258
Target Start/End: Complemental strand, 43895943 - 43895847
Alignment:
Q  162 tttgttgcttaattattgatctctga-tagttagtagttactcagnnnnnnnattttgttctgcatttaatacttgatcctatctatgctgtcaagat 258  Q
    |||||||||||||||||||||||||| || |||||||||||| |        ||| |||||||||||||| || ||||||||||| ||| ||||||||    
T  43895943 tttgttgcttaattattgatctctgattatttagtagttact-aaattttttattgtgttctgcatttaacacctgatcctatctctgccgtcaagat 43895847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 44306394 - 44306353
Alignment:
Q  162 tttgttgcttaattattgatctctga-tagttagtagttact 202  Q
    |||||||||||||||||||||||||| || ||||||||||||    
T  44306394 tttgttgcttaattattgatctctgattatttagtagttact 44306353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 6 - 177
Target Start/End: Complemental strand, 4084287 - 4084120
Alignment:
Q  6 gggtctgttagatatataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattca 105  Q
    |||||| ||||||||| ||||||||||||   ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| ||||||    
T  4084287 gggtctattagatatacaatgacttctgc---cgatgttcctgcttattcggtctcaaaggattcaggagagaaattttcaaatggtgtgaatggattca 4084191  T
Q  106 ttccagagaaatgatcatacttacccagttggtttggtctgttaactttgctatgttttgttgcttaattat 177  Q
    |||||||||||||||| |||||| |||||||||||||  ||||| |||| ||||| ||||||||||| ||||    
T  4084190 ttccagagaaatgatcctactta-ccagttggtttggcttgttagctttactatggtttgttgcttatttat 4084120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 4084099 - 4084056
Alignment:
Q  162 tttgttgcttaattattgatctctga-tagttagtagttactca 204  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  4084099 tttgttgcttaattattgatctctgattagttagtagttactca 4084056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 4 - 167
Target Start/End: Complemental strand, 18701781 - 18701618
Alignment:
Q  4 atgggtctgttagatatataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgatt 103  Q
    |||||||||||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||  ||  | | ||||||||||||||||||||||||    
T  18701781 atgggtctgttagatatacaatgacttctgctg---atgttcctgcttattcggtctcaaaagattccgggcatacattttcaaatggtgtgaattgatt 18701685  T
Q  104 cattccagaga---aatgatcatacttacccagttggtttggtctgttaactttgctatgttttgtt 167  Q
    ||||| |||||   ||||||| ||||||||| ||||||||||| | ||| |||||| ||| ||||||    
T  18701684 cattctagagaaataatgatcctacttaccctgttggtttggtttattagctttgcaatggtttgtt 18701618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 143
Target Start/End: Original strand, 35856948 - 35857053
Alignment:
Q  34 ctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattccagagaaatgatcatacttacccag 133  Q
    ||||| |||||| || |||||||||||||||||||| | | ||| ||| |||||||| ||||||| ||||     ||||||||||||| |||||||||||    
T  35856948 ctgccaatgttcttgattattcggtctcaaaagattctagcgagcaatcttcaaatgttgtgaatggatta----cagagaaatgatcctacttacccag 35857043  T
Q  134 ttggtttggt 143  Q
    ||||||||||    
T  35857044 ttggtttggt 35857053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University