View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2228_low_18 (Length: 250)
Name: NF2228_low_18
Description: NF2228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2228_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 2291797 - 2292040
Alignment:
| Q |
1 |
ctggttgagttggtaaaattctattaatgataaattttataaccatttctctttatattttgcactccaaataatgagttgatgggtatgtgaatgttat |
100 |
Q |
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| T |
2291797 |
ctggttgagttggtaaaattctattaatgataaattttataaccatttctctttatattttgcactccaaataatgagttgatgggtatgtgaatgttat |
2291896 |
T |
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| Q |
101 |
gaaatcagttgatcttccatctgttatgaatcagtcaaggtgacgaggagtttgtaatagtcaacaaaacatattacgagattcaagaaagattgtttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2291897 |
gaaatcagttgatcttccatctgttatgaatcagtcaaggtgacgaggagtttgtaatagtcaacaaaacatattacgagattcaagaaagattgtttgt |
2291996 |
T |
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| Q |
201 |
aaggaaagtttggcaatggaaggaagaagggttatattcttgga |
244 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
2291997 |
aaggaaagtttggcaatggaaggaagaagggttattttgttgga |
2292040 |
T |
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